Expression of 1-1-5.2.14.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.677910.534
27DAP/17DAP1.311430.804
39DAP/27DAP0.930880.641
41DAP/39DAP1.251340.387
42DAP/41DAP1.166460.937
43DAP/42DAP0.95250.892
47DAP/43DAP1.471680.727
52DAP/47DAP1.150070.757
57DAP/52DAP0.829510.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.96613
17DAP/reference0.96304
27DAP/referenceN/AN/A
39DAP/reference0.45692
41DAP/reference0.917550.667
42DAP/reference1.149520.756
43DAP/referenceN/AN/A
47DAP/reference1.210010.862
52DAP/reference1.39126
57DAP/reference0.29191

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.082341
27DAP/17DAP0.998910.887
39DAP/27DAP1.409140.465
41DAP/39DAP0.708450.398
42DAP/41DAP2.101270.478
43DAP/42DAP1.162330.162
47DAP/43DAP1.218650.678
52DAP/47DAP1.133450.779
57DAP/52DAP0.86010.511
57DAP/7DAP0.72281

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.94310.246
17DAP/reference0.908480.049
27DAP/reference0.820220.025
39DAP/reference0.822270.011
41DAP/reference0.744540.013
42DAP/reference0.681980.01
43DAP/reference0.723070.015
47DAP/reference0.753790.293
52DAP/reference0.719590.024
57DAP/reference0.775280.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.067910.373
17DAP/reference2.47875
27DAP/reference1.698530.265
39DAP/referenceN/AN/A
41DAP/reference2.15091
42DAP/reference0.853560.433
43DAP/reference0.966830.552
47DAP/reference0.683440.094
52DAP/reference0.8077
57DAP/reference1.37892

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.117630.056
17DAP/reference1.021480.918
27DAP/reference0.935060.243
39DAP/reference0.834430.008
41DAP/reference0.826840.019
42DAP/reference0.875480.028
43DAP/reference1.192660.499
47DAP/referenceN/AN/A
52DAP/reference1.125520.99
57DAP/reference0.547150.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.528660.04
26DAP/20DAP0.71547
34DAP/26DAP2.443471
51DAP/34DAP1.4823
52DAP/51DAP2.362350.367
53DAP/52DAP0.84943
55DAP/53DAP0.85402
57DAP/55DAP1.293890.694
62DAP/57DAP0.98631
68DAP/62DAP0.68912
68DAP/14DAP0.30301

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.625940.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.948931
IL2-6/WTpooled1.142150.531
IL7-5/WTpooled1.10072
IL7-3/WTpooled1.026961
IL12-4/WTpooled0.844150.581
IL1-4/WTpooled1.031491
WT/WTpooled0.91291

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.280010.594
Var 12h I row2-row11.02038
Var 12h NI row2-row11.151090.649
Var 36h I row2-row11.144721
Var 36h NI row2-row11.07891
Var 60h I row2-row10.957730.374
Var 60h NI row2-row11.058831
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNI1.37993

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.166061
Manapal/WT (red)N/AN/A