Expression of 1-1-5.2.14.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29109 | 0.77 |
27DAP/17DAP | 1.11954 | 0.859 |
39DAP/27DAP | 1.8864 | 0.188 |
41DAP/39DAP | 0.93759 | 0.524 |
42DAP/41DAP | 2.72958 | 0.048 |
43DAP/42DAP | 1.79287 | 0.726 |
47DAP/43DAP | 0.68747 | 0.219 |
52DAP/47DAP | 1.99478 | 0.906 |
57DAP/52DAP | 1.41144 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.58115 | 0.101 |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.57594 | |
39DAP/reference | 1.98917 | |
41DAP/reference | 0.52876 | |
42DAP/reference | 1.75905 | 0.299 |
43DAP/reference | 0.65466 | |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.95216 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.57709 | 0.438 |
27DAP/17DAP | 1.50254 | 0.639 |
39DAP/27DAP | 1.51849 | 0.453 |
41DAP/39DAP | 1.07123 | 1 |
42DAP/41DAP | 0.6523 | 0.25 |
43DAP/42DAP | 0.92483 | 0.729 |
47DAP/43DAP | N/A | N/A |
52DAP/47DAP | 1.38936 | 0.458 |
57DAP/52DAP | 2.49211 | |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.40911 | 0.024 |
17DAP/reference | 1.72997 | 0.007 |
27DAP/reference | 1.83239 | 0.007 |
39DAP/reference | 1.58819 | 0.01 |
41DAP/reference | 1.9409 | 0.008 |
42DAP/reference | 1.631 | 0.006 |
43DAP/reference | 1.95551 | 0.008 |
47DAP/reference | 1.78028 | 0.022 |
52DAP/reference | 1.63533 | 0.009 |
57DAP/reference | 1.12822 | 0.331 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 0.88435 | 0.499 |
27DAP/reference | 0.8574 | |
39DAP/reference | N/A | N/A |
41DAP/reference | 0.65425 | 0.315 |
42DAP/reference | 1.61562 | 0.519 |
43DAP/reference | 0.83153 | 0.394 |
47DAP/reference | 2.472 | 0.008 |
52DAP/reference | N/A | N/A |
57DAP/reference | 0.93695 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.4928 | 0.015 |
17DAP/reference | 1.64958 | 0.303 |
27DAP/reference | 2.10805 | 0.014 |
39DAP/reference | 1.57094 | 0.005 |
41DAP/reference | 1.26373 | 0.027 |
42DAP/reference | 1.03635 | 0.692 |
43DAP/reference | 1.2011 | 0.164 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.71734 | 0.058 |
57DAP/reference | 3.45325 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.8558 | 1 |
26DAP/20DAP | 0.84878 | 0.223 |
34DAP/26DAP | 2.38846 | 1 |
51DAP/34DAP | 1.8757 | 0.115 |
52DAP/51DAP | 0.59248 | 0.151 |
53DAP/52DAP | 0.99452 | 0.929 |
55DAP/53DAP | 0.66891 | 0.35 |
57DAP/55DAP | 1.28384 | 0.61 |
62DAP/57DAP | 1.11756 | 0.868 |
68DAP/62DAP | 0.53795 | |
68DAP/14DAP | 1.18381 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90291 | 1 |
IL2-6/WTpooled | 1.12283 | 0.659 |
IL7-5/WTpooled | 1.24614 | |
IL7-3/WTpooled | 0.78506 | 0.294 |
IL12-4/WTpooled | 1.09017 | 0.839 |
IL1-4/WTpooled | 1.07087 | 1 |
WT/WTpooled | 1.0417 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.1188 | 0.98 |
Var 12h I row2-row1 | 1.00736 | |
Var 12h NI row2-row1 | 1.03376 | |
Var 36h I row2-row1 | 0.40905 | |
Var 36h NI row2-row1 | 1.09806 | 0.482 |
Var 60h I row2-row1 | 0.83803 | 0.374 |
Var 60h NI row2-row1 | 0.91447 | |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | 1.97774 | 0.115 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.2888 | 1 |
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