Expression of 1-1-5.2.14.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.291090.77
27DAP/17DAP1.119540.859
39DAP/27DAP1.88640.188
41DAP/39DAP0.937590.524
42DAP/41DAP2.729580.048
43DAP/42DAP1.792870.726
47DAP/43DAP0.687470.219
52DAP/47DAP1.994780.906
57DAP/52DAP1.411440.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.581150.101
17DAP/referenceN/AN/A
27DAP/reference0.57594
39DAP/reference1.98917
41DAP/reference0.52876
42DAP/reference1.759050.299
43DAP/reference0.65466
47DAP/referenceN/AN/A
52DAP/reference0.95216
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.577090.438
27DAP/17DAP1.502540.639
39DAP/27DAP1.518490.453
41DAP/39DAP1.071231
42DAP/41DAP0.65230.25
43DAP/42DAP0.924830.729
47DAP/43DAPN/AN/A
52DAP/47DAP1.389360.458
57DAP/52DAP2.49211
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.409110.024
17DAP/reference1.729970.007
27DAP/reference1.832390.007
39DAP/reference1.588190.01
41DAP/reference1.94090.008
42DAP/reference1.6310.006
43DAP/reference1.955510.008
47DAP/reference1.780280.022
52DAP/reference1.635330.009
57DAP/reference1.128220.331

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.884350.499
27DAP/reference0.8574
39DAP/referenceN/AN/A
41DAP/reference0.654250.315
42DAP/reference1.615620.519
43DAP/reference0.831530.394
47DAP/reference2.4720.008
52DAP/referenceN/AN/A
57DAP/reference0.93695

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.49280.015
17DAP/reference1.649580.303
27DAP/reference2.108050.014
39DAP/reference1.570940.005
41DAP/reference1.263730.027
42DAP/reference1.036350.692
43DAP/reference1.20110.164
47DAP/referenceN/AN/A
52DAP/reference1.717340.058
57DAP/reference3.453250.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.85581
26DAP/20DAP0.848780.223
34DAP/26DAP2.388461
51DAP/34DAP1.87570.115
52DAP/51DAP0.592480.151
53DAP/52DAP0.994520.929
55DAP/53DAP0.668910.35
57DAP/55DAP1.283840.61
62DAP/57DAP1.117560.868
68DAP/62DAP0.53795
68DAP/14DAP1.18381

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.902911
IL2-6/WTpooled1.122830.659
IL7-5/WTpooled1.24614
IL7-3/WTpooled0.785060.294
IL12-4/WTpooled1.090170.839
IL1-4/WTpooled1.070871
WT/WTpooled1.04171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.11880.98
Var 12h I row2-row11.00736
Var 12h NI row2-row11.03376
Var 36h I row2-row10.40905
Var 36h NI row2-row11.098060.482
Var 60h I row2-row10.838030.374
Var 60h NI row2-row10.91447
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNI1.977740.115

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.28881