Expression of 1-1-5.2.14.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23465 | 0.838 |
27DAP/17DAP | 1.7078 | 0.581 |
39DAP/27DAP | 1.2092 | 0.693 |
41DAP/39DAP | 0.80621 | 0.315 |
42DAP/41DAP | 1.09472 | 0.978 |
43DAP/42DAP | 0.93828 | 0.877 |
47DAP/43DAP | 1.3303 | 0.756 |
52DAP/47DAP | 0.71602 | 0.357 |
57DAP/52DAP | 0.92852 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00094 | 0.707 |
17DAP/reference | 1.01306 | 0.874 |
27DAP/reference | 1.14097 | 0.096 |
39DAP/reference | 1.1366 | 0.027 |
41DAP/reference | 1.13249 | 0.451 |
42DAP/reference | 1.09315 | 0.398 |
43DAP/reference | 1.10086 | 0.202 |
47DAP/reference | 1.36805 | 0.022 |
52DAP/reference | 1.17605 | 0.062 |
57DAP/reference | 1.10034 | 0.173 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96087 | 0.697 |
27DAP/17DAP | 0.77248 | 0.121 |
39DAP/27DAP | 0.95587 | 0.737 |
41DAP/39DAP | 1.18997 | 0.439 |
42DAP/41DAP | 0.89806 | 0.416 |
43DAP/42DAP | 0.95338 | 0.641 |
47DAP/43DAP | 1.07061 | 0.88 |
52DAP/47DAP | 1.19544 | 0.455 |
57DAP/52DAP | 1.14684 | 0.455 |
57DAP/7DAP | 2.17316 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37038 | 0.035 |
17DAP/reference | 1.46472 | 0.006 |
27DAP/reference | 1.3376 | 0.013 |
39DAP/reference | 1.55222 | 0.006 |
41DAP/reference | 1.54134 | 0.013 |
42DAP/reference | 1.58761 | 0.007 |
43DAP/reference | 1.92436 | 0.007 |
47DAP/reference | 1.531 | 0.025 |
52DAP/reference | 1.51833 | 0.007 |
57DAP/reference | 1.47403 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97589 | 0.688 |
17DAP/reference | 1.40017 | 0.009 |
27DAP/reference | 1.14865 | 0.244 |
39DAP/reference | 1.17157 | 0.155 |
41DAP/reference | 1.10787 | 0.248 |
42DAP/reference | 1.27816 | 0.024 |
43DAP/reference | 1.08799 | 0.939 |
47DAP/reference | 1.08998 | 0.556 |
52DAP/reference | 1.08192 | 1 |
57DAP/reference | 0.95411 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15054 | 0.329 |
17DAP/reference | 1.07167 | 0.657 |
27DAP/reference | 1.40659 | 0.023 |
39DAP/reference | 1.45426 | 0.015 |
41DAP/reference | 1.19765 | 0.02 |
42DAP/reference | 1.33493 | 0.032 |
43DAP/reference | 1.41658 | 0.04 |
47DAP/reference | 1.50897 | 0.006 |
52DAP/reference | 1.72408 | 0.065 |
57DAP/reference | 1.21766 | 0.023 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.84015 | 0.807 |
26DAP/20DAP | 1.29365 | 0.512 |
34DAP/26DAP | 0.73781 | 0.194 |
51DAP/34DAP | 0.82009 | 0.264 |
52DAP/51DAP | 0.87292 | 1 |
53DAP/52DAP | 1.06282 | 0.783 |
55DAP/53DAP | 1.06797 | 1 |
57DAP/55DAP | 1.55341 | 0.643 |
62DAP/57DAP | 1.0779 | 0.935 |
68DAP/62DAP | 1.34965 | 0.664 |
68DAP/14DAP | 1.10318 | 0.826 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.06676 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.3587 | 0.075 |
Mature Green Tomato/Ripe Tomato | 0.88544 | 0.287 |
Immature Eggplant/Mature Eggplant | 1.4211 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.76408 | |
Mature Eggplant/Ripe Tomato | 0.6151 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.79016 | |
1-1-2/M82 | 1.14384 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.97097 | 0.619 |
1-3/M82 | 0.8597 | |
2-1-1/M82 | 0.9039 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.17291 | |
3-2/M82 | 1.12481 | |
4-1-1/M82 | 1.16167 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.95708 | 1 |
5-3/M82 | 0.87809 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.98728 | 1 |
7-1/M82 | 0.91389 | |
7-2/M82 | 0.95625 | 1 |
9-3-2/M82 | 1.40351 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.81525 | 0.247 |
IL2-6/WTpooled | 1.11422 | 0.46 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.9898 | 1 |
IL12-4/WTpooled | 1.03602 | 0.839 |
IL1-4/WTpooled | 1.00601 | 1 |
WT/WTpooled | 1.00242 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17366 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06805 | 0.921 |
DC3000/delta hrp 6h | 0.82193 | 0.95 |
DC3000/delta hrp 12h | 1.06655 | 1 |
DC3000/delta hrp 24h | 0.92657 | 0.692 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04924 | 1 |
Exp 36h | 0.91802 | 0.879 |
Exp 60h | 1.03208 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04009 | 1 |
Var 0h | 1.69809 | 0.594 |
Var 12h I row2-row1 | 0.98592 | 1 |
Var 12h NI row2-row1 | 1.19949 | 1 |
Var 36h I row2-row1 | 1.13366 | 1 |
Var 36h NI row2-row1 | 0.7901 | 0.706 |
Var 60h I row2-row1 | 1.00613 | 1 |
Var 60h NI row2-row1 | 0.86026 | 0.866 |
Time course 0hI-0hNI | 1.07592 | 0.833 |
Time course 12hI-12hNI | 1.10881 | 0.422 |
Time course 36hI-36hNI | 1.22393 | 0.016 |
Time course 60hI-60hNI | 1.41905 | 0.013 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98226 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.79162 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.95998 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99857 | 0.886 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81756 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.87944 | 1 |
Manapal/WT (break) | 1.04384 | 1 |
Manapal/WT (red) | 0.86939 | 0.229 |
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