Expression of 1-1-5.2.14.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.234650.838
27DAP/17DAP1.70780.581
39DAP/27DAP1.20920.693
41DAP/39DAP0.806210.315
42DAP/41DAP1.094720.978
43DAP/42DAP0.938280.877
47DAP/43DAP1.33030.756
52DAP/47DAP0.716020.357
57DAP/52DAP0.928520.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.000940.707
17DAP/reference1.013060.874
27DAP/reference1.140970.096
39DAP/reference1.13660.027
41DAP/reference1.132490.451
42DAP/reference1.093150.398
43DAP/reference1.100860.202
47DAP/reference1.368050.022
52DAP/reference1.176050.062
57DAP/reference1.100340.173

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.960870.697
27DAP/17DAP0.772480.121
39DAP/27DAP0.955870.737
41DAP/39DAP1.189970.439
42DAP/41DAP0.898060.416
43DAP/42DAP0.953380.641
47DAP/43DAP1.070610.88
52DAP/47DAP1.195440.455
57DAP/52DAP1.146840.455
57DAP/7DAP2.173160.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.370380.035
17DAP/reference1.464720.006
27DAP/reference1.33760.013
39DAP/reference1.552220.006
41DAP/reference1.541340.013
42DAP/reference1.587610.007
43DAP/reference1.924360.007
47DAP/reference1.5310.025
52DAP/reference1.518330.007
57DAP/reference1.474030.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.975890.688
17DAP/reference1.400170.009
27DAP/reference1.148650.244
39DAP/reference1.171570.155
41DAP/reference1.107870.248
42DAP/reference1.278160.024
43DAP/reference1.087990.939
47DAP/reference1.089980.556
52DAP/reference1.081921
57DAP/reference0.954110.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.150540.329
17DAP/reference1.071670.657
27DAP/reference1.406590.023
39DAP/reference1.454260.015
41DAP/reference1.197650.02
42DAP/reference1.334930.032
43DAP/reference1.416580.04
47DAP/reference1.508970.006
52DAP/reference1.724080.065
57DAP/reference1.217660.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.840150.807
26DAP/20DAP1.293650.512
34DAP/26DAP0.737810.194
51DAP/34DAP0.820090.264
52DAP/51DAP0.872921
53DAP/52DAP1.062820.783
55DAP/53DAP1.067971
57DAP/55DAP1.553410.643
62DAP/57DAP1.07790.935
68DAP/62DAP1.349650.664
68DAP/14DAP1.103180.826

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.066761

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.35870.075
Mature Green Tomato/Ripe Tomato0.885440.287
Immature Eggplant/Mature Eggplant1.42110.05
Ripe Pepper/Ripe Tomato0.76408
Mature Eggplant/Ripe Tomato0.61510.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.79016
1-1-2/M821.14384
12-2/M82N/AN/A
12-4/M820.970970.619
1-3/M820.8597
2-1-1/M820.90391
2-1/M82N/AN/A
2-6/M821.17291
3-2/M821.12481
4-1-1/M821.16167
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.957081
5-3/M820.878090.642
6-2/M82N/AN/A
6-3/M820.987281
7-1/M820.91389
7-2/M820.956251
9-3-2/M821.40351

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.815250.247
IL2-6/WTpooled1.114220.46
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.98981
IL12-4/WTpooled1.036020.839
IL1-4/WTpooled1.006011
WT/WTpooled1.002421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.173660.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.068050.921
DC3000/delta hrp 6h0.821930.95
DC3000/delta hrp 12h1.066551
DC3000/delta hrp 24h0.926570.692

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.049241
Exp 36h0.918020.879
Exp 60h1.032081

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.040091
Var 0h1.698090.594
Var 12h I row2-row10.985921
Var 12h NI row2-row11.199491
Var 36h I row2-row11.133661
Var 36h NI row2-row10.79010.706
Var 60h I row2-row11.006131
Var 60h NI row2-row10.860260.866
Time course 0hI-0hNI1.075920.833
Time course 12hI-12hNI1.108810.422
Time course 36hI-36hNI1.223930.016
Time course 60hI-60hNI1.419050.013

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.982260.567
transgenic ySAMdc/azygous control (breaker)0.791620.15
transgenic ySAMdc/azygous control (red)0.959981

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.998570.886

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.817560.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.879441
Manapal/WT (break)1.043841
Manapal/WT (red)0.869390.229