Expression of 1-1-5.2.15.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.976930.811
27DAP/17DAP1.098360.864
39DAP/27DAP1.157670.732
41DAP/39DAP1.076150.416
42DAP/41DAP1.000541
43DAP/42DAP1.007841
47DAP/43DAP0.96930.868
52DAP/47DAP1.173990.651
57DAP/52DAP1.018631

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.999050.787
17DAP/reference0.983740.597
27DAP/reference1.021850.672
39DAP/reference1.054560.079
41DAP/reference0.992260.814
42DAP/reference1.082110.068
43DAP/reference1.003371
47DAP/reference1.035850.419
52DAP/reference0.917510.267
57DAP/reference1.066160.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.123830.189
27DAP/17DAP0.959640.748
39DAP/27DAP0.945250.356
41DAP/39DAP1.008951
42DAP/41DAP1.011461
43DAP/42DAP0.989630.902
47DAP/43DAP1.001461
52DAP/47DAP0.983360.93
57DAP/52DAP1.00181
57DAP/7DAP0.81203

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931940.138
17DAP/reference0.961530.094
27DAP/reference0.950560.185
39DAP/reference1.019570.538
41DAP/reference0.982750.326
42DAP/reference0.98420.582
43DAP/reference1.140470.053
47DAP/reference1.091320.345
52DAP/reference1.245460.055
57DAP/reference1.303770.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.921630.1
17DAP/reference0.967090.307
27DAP/reference0.984950.598
39DAP/reference1.066930.355
41DAP/reference1.074260.406
42DAP/reference1.060220.697
43DAP/reference1.009961
47DAP/reference1.1240.02
52DAP/reference0.961270.121
57DAP/reference1.040180.654

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.941870.068
17DAP/reference0.973410.477
27DAP/reference0.95130.052
39DAP/reference1.01960.711
41DAP/reference0.988890.618
42DAP/reference0.890620.028
43DAP/reference0.926670.143
47DAP/reference1.019140.73
52DAP/reference0.907730.296
57DAP/reference0.930710.321

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.97071
26DAP/20DAP1.064370.778
34DAP/26DAP1.006971
51DAP/34DAP1.031220.829
52DAP/51DAP1.014180.873
53DAP/52DAP1.042690.895
55DAP/53DAP1.06140.79
57DAP/55DAP0.871260.398
62DAP/57DAP1.038041
68DAP/62DAP1.485330.405
68DAP/14DAP1.020541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.143570.246

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.676940.176
Mature Green Tomato/Ripe Tomato0.726190.017
Immature Eggplant/Mature Eggplant0.822250.254
Ripe Pepper/Ripe Tomato0.21390.224
Mature Eggplant/Ripe Tomato0.23280.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.911950.944
1-1-2/M820.947680.958
12-2/M820.974681
12-4/M820.96671
1-3/M820.87540.441
2-1-1/M820.87850.465
2-1/M821.190951
2-6/M820.924371
3-2/M820.932011
4-1-1/M820.987851
4-1/M820.968841
4-3-2/M820.771180.698
4-3/M820.902150.72
5-3/M820.988381
6-2/M820.980951
6-3/M821.034141
7-1/M820.960321
7-2/M820.93890.881
9-3-2/M820.829520.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.978221
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.958370.418
IL12-4/WTpooled1.006781
IL1-4/WTpooled1.053141
WT/WTpooled1.04681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.670710.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.947951
DC3000/delta hrp 6h0.943140.95
DC3000/delta hrp 12h1.011751
DC3000/delta hrp 24h0.985261

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.309250.042
DC3000 delta B/DC3000 delta AB1.262660.139

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.445631
Exp 36h0.935210.879
Exp 60h0.999541

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97011
Var 0h0.682520.933
Var 12h I row2-row11.236540.296
Var 12h NI row2-row11.052531
Var 36h I row2-row10.957451
Var 36h NI row2-row10.941270.743
Var 60h I row2-row11.022941
Var 60h NI row2-row11.051051
Time course 0hI-0hNI1.011561
Time course 12hI-12hNI0.966850.682
Time course 36hI-36hNI1.01640.799
Time course 60hI-60hNI1.958970.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.578020.3
transgenic ySAMdc/azygous control (breaker)1.49231
transgenic ySAMdc/azygous control (red)1.262160.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.912990.064

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.030611

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)7.202910.084
Manapal/WT (break)0.792120.333
Manapal/WT (red)1.939931