Expression of 1-1-5.2.15.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97693 | 0.811 |
27DAP/17DAP | 1.09836 | 0.864 |
39DAP/27DAP | 1.15767 | 0.732 |
41DAP/39DAP | 1.07615 | 0.416 |
42DAP/41DAP | 1.00054 | 1 |
43DAP/42DAP | 1.00784 | 1 |
47DAP/43DAP | 0.9693 | 0.868 |
52DAP/47DAP | 1.17399 | 0.651 |
57DAP/52DAP | 1.01863 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99905 | 0.787 |
17DAP/reference | 0.98374 | 0.597 |
27DAP/reference | 1.02185 | 0.672 |
39DAP/reference | 1.05456 | 0.079 |
41DAP/reference | 0.99226 | 0.814 |
42DAP/reference | 1.08211 | 0.068 |
43DAP/reference | 1.00337 | 1 |
47DAP/reference | 1.03585 | 0.419 |
52DAP/reference | 0.91751 | 0.267 |
57DAP/reference | 1.06616 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12383 | 0.189 |
27DAP/17DAP | 0.95964 | 0.748 |
39DAP/27DAP | 0.94525 | 0.356 |
41DAP/39DAP | 1.00895 | 1 |
42DAP/41DAP | 1.01146 | 1 |
43DAP/42DAP | 0.98963 | 0.902 |
47DAP/43DAP | 1.00146 | 1 |
52DAP/47DAP | 0.98336 | 0.93 |
57DAP/52DAP | 1.0018 | 1 |
57DAP/7DAP | 0.81203 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93194 | 0.138 |
17DAP/reference | 0.96153 | 0.094 |
27DAP/reference | 0.95056 | 0.185 |
39DAP/reference | 1.01957 | 0.538 |
41DAP/reference | 0.98275 | 0.326 |
42DAP/reference | 0.9842 | 0.582 |
43DAP/reference | 1.14047 | 0.053 |
47DAP/reference | 1.09132 | 0.345 |
52DAP/reference | 1.24546 | 0.055 |
57DAP/reference | 1.30377 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92163 | 0.1 |
17DAP/reference | 0.96709 | 0.307 |
27DAP/reference | 0.98495 | 0.598 |
39DAP/reference | 1.06693 | 0.355 |
41DAP/reference | 1.07426 | 0.406 |
42DAP/reference | 1.06022 | 0.697 |
43DAP/reference | 1.00996 | 1 |
47DAP/reference | 1.124 | 0.02 |
52DAP/reference | 0.96127 | 0.121 |
57DAP/reference | 1.04018 | 0.654 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94187 | 0.068 |
17DAP/reference | 0.97341 | 0.477 |
27DAP/reference | 0.9513 | 0.052 |
39DAP/reference | 1.0196 | 0.711 |
41DAP/reference | 0.98889 | 0.618 |
42DAP/reference | 0.89062 | 0.028 |
43DAP/reference | 0.92667 | 0.143 |
47DAP/reference | 1.01914 | 0.73 |
52DAP/reference | 0.90773 | 0.296 |
57DAP/reference | 0.93071 | 0.321 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9707 | 1 |
26DAP/20DAP | 1.06437 | 0.778 |
34DAP/26DAP | 1.00697 | 1 |
51DAP/34DAP | 1.03122 | 0.829 |
52DAP/51DAP | 1.01418 | 0.873 |
53DAP/52DAP | 1.04269 | 0.895 |
55DAP/53DAP | 1.0614 | 0.79 |
57DAP/55DAP | 0.87126 | 0.398 |
62DAP/57DAP | 1.03804 | 1 |
68DAP/62DAP | 1.48533 | 0.405 |
68DAP/14DAP | 1.02054 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.14357 | 0.246 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.67694 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.72619 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.82225 | 0.254 |
Ripe Pepper/Ripe Tomato | 0.2139 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.2328 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.91195 | 0.944 |
1-1-2/M82 | 0.94768 | 0.958 |
12-2/M82 | 0.97468 | 1 |
12-4/M82 | 0.9667 | 1 |
1-3/M82 | 0.8754 | 0.441 |
2-1-1/M82 | 0.8785 | 0.465 |
2-1/M82 | 1.19095 | 1 |
2-6/M82 | 0.92437 | 1 |
3-2/M82 | 0.93201 | 1 |
4-1-1/M82 | 0.98785 | 1 |
4-1/M82 | 0.96884 | 1 |
4-3-2/M82 | 0.77118 | 0.698 |
4-3/M82 | 0.90215 | 0.72 |
5-3/M82 | 0.98838 | 1 |
6-2/M82 | 0.98095 | 1 |
6-3/M82 | 1.03414 | 1 |
7-1/M82 | 0.96032 | 1 |
7-2/M82 | 0.9389 | 0.881 |
9-3-2/M82 | 0.82952 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.97822 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.95837 | 0.418 |
IL12-4/WTpooled | 1.00678 | 1 |
IL1-4/WTpooled | 1.05314 | 1 |
WT/WTpooled | 1.0468 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.67071 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94795 | 1 |
DC3000/delta hrp 6h | 0.94314 | 0.95 |
DC3000/delta hrp 12h | 1.01175 | 1 |
DC3000/delta hrp 24h | 0.98526 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.30925 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.26266 | 0.139 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.44563 | 1 |
Exp 36h | 0.93521 | 0.879 |
Exp 60h | 0.99954 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9701 | 1 |
Var 0h | 0.68252 | 0.933 |
Var 12h I row2-row1 | 1.23654 | 0.296 |
Var 12h NI row2-row1 | 1.05253 | 1 |
Var 36h I row2-row1 | 0.95745 | 1 |
Var 36h NI row2-row1 | 0.94127 | 0.743 |
Var 60h I row2-row1 | 1.02294 | 1 |
Var 60h NI row2-row1 | 1.05105 | 1 |
Time course 0hI-0hNI | 1.01156 | 1 |
Time course 12hI-12hNI | 0.96685 | 0.682 |
Time course 36hI-36hNI | 1.0164 | 0.799 |
Time course 60hI-60hNI | 1.95897 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.57802 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.4923 | 1 |
transgenic ySAMdc/azygous control (red) | 1.26216 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91299 | 0.064 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03061 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 7.20291 | 0.084 |
Manapal/WT (break) | 0.79212 | 0.333 |
Manapal/WT (red) | 1.93993 | 1 |
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