Expression of 1-1-5.2.15.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.808710.253
27DAP/17DAP0.944290.839
39DAP/27DAP0.948880.663
41DAP/39DAP0.944070.777
42DAP/41DAP1.164740.926
43DAP/42DAP0.986930.931
47DAP/43DAP0.984460.876
52DAP/47DAP1.103180.861
57DAP/52DAP1.102411

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.992510.679
17DAP/reference0.84350.019
27DAP/reference0.940360.428
39DAP/reference0.858010.022
41DAP/reference0.784670.009
42DAP/reference0.883020.043
43DAP/reference0.933220.123
47DAP/reference0.910760.116
52DAP/reference1.132370.633
57DAP/reference1.193280.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.007690.801
27DAP/17DAP1.105790.476
39DAP/27DAP1.051660.691
41DAP/39DAP0.988160.973
42DAP/41DAP0.919290.52
43DAP/42DAP0.986890.875
47DAP/43DAP0.96680.855
52DAP/47DAP0.970140.893
57DAP/52DAP1.017221
57DAP/7DAP0.963321

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.224340.09
17DAP/reference1.015611
27DAP/reference0.951250.2
39DAP/reference0.928560.146
41DAP/reference1.042511
42DAP/reference0.920370.262
43DAP/reference0.985840.527
47DAP/reference0.742550.044
52DAP/reference0.888060.179
57DAP/reference0.869280.069

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.188350.3
17DAP/reference0.746430.007
27DAP/reference0.883430.108
39DAP/reference0.774640.019
41DAP/reference0.856010.118
42DAP/reference0.79330.037
43DAP/reference0.709660.013
47DAP/reference0.831140.01
52DAP/reference0.770580.005
57DAP/reference0.708050.006

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.125870.32
17DAP/reference0.939560.499
27DAP/reference1.074550.408
39DAP/reference1.007860.889
41DAP/reference0.935480.371
42DAP/reference1.049351
43DAP/reference0.986580.639
47DAP/reference0.797610.005
52DAP/reference0.900960.376
57DAP/reference1.340360.192

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.02381
26DAP/20DAP1.93820.097
34DAP/26DAP0.649130.093
51DAP/34DAP0.890490.703
52DAP/51DAP1.249470.446
53DAP/52DAP0.874880.604
55DAP/53DAP1.035791
57DAP/55DAP1.4520.543
62DAP/57DAP1.287240.257
68DAP/62DAP1.08180.931
68DAP/14DAP6.419890.265

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.216480.782

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.008070.826
Mature Green Tomato/Ripe Tomato0.821750.446
Immature Eggplant/Mature Eggplant0.5640.062
Ripe Pepper/Ripe Tomato0.20001
Mature Eggplant/Ripe Tomato1.366781

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.466820.591
1-1-2/M821.111231
12-2/M82N/AN/A
12-4/M822.848111
1-3/M821.40632
2-1-1/M820.989471
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.95436
4-1-1/M821.21005
4-1/M82N/AN/A
4-3-2/M820.80414
4-3/M821.117381
5-3/M821.155840.572
6-2/M82N/AN/A
6-3/M821.127191
7-1/M821.07098
7-2/M820.94477
9-3-2/M821.312211

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.761190.247
IL2-6/WTpooled2.936690.419
IL7-5/WTpooled1.334361
IL7-3/WTpooled0.540020.294
IL12-4/WTpooled1.678230.785
IL1-4/WTpooled1.178251
WT/WTpooled0.990651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.121411

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.897240.664
DC3000/delta hrp 6h1.054361
DC3000/delta hrp 12h0.84151
DC3000/delta hrp 24h1.185740.322

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.743730.365
DC3000 delta B/DC3000 delta AB0.733950.075

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.866511
Exp 36h0.70210.449
Exp 60h0.686340.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.930791
Var 0h1.116241
Var 12h I row2-row11.2140.224
Var 12h NI row2-row11.052941
Var 36h I row2-row10.75391
Var 36h NI row2-row11.022951
Var 60h I row2-row11.19663
Var 60h NI row2-row13.64920.904
Time course 0hI-0hNI1.010161
Time course 12hI-12hNI1.073570.633
Time course 36hI-36hNI1.224090.015
Time course 60hI-60hNI1.340590.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.929030.348
transgenic ySAMdc/azygous control (breaker)0.900420.142
transgenic ySAMdc/azygous control (red)1.136220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.911020.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.395950.227

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.055960.096
Manapal/WT (break)1.49140.381
Manapal/WT (red)1.566180.222