Expression of 1-1-5.2.15.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80871 | 0.253 |
27DAP/17DAP | 0.94429 | 0.839 |
39DAP/27DAP | 0.94888 | 0.663 |
41DAP/39DAP | 0.94407 | 0.777 |
42DAP/41DAP | 1.16474 | 0.926 |
43DAP/42DAP | 0.98693 | 0.931 |
47DAP/43DAP | 0.98446 | 0.876 |
52DAP/47DAP | 1.10318 | 0.861 |
57DAP/52DAP | 1.10241 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99251 | 0.679 |
17DAP/reference | 0.8435 | 0.019 |
27DAP/reference | 0.94036 | 0.428 |
39DAP/reference | 0.85801 | 0.022 |
41DAP/reference | 0.78467 | 0.009 |
42DAP/reference | 0.88302 | 0.043 |
43DAP/reference | 0.93322 | 0.123 |
47DAP/reference | 0.91076 | 0.116 |
52DAP/reference | 1.13237 | 0.633 |
57DAP/reference | 1.19328 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00769 | 0.801 |
27DAP/17DAP | 1.10579 | 0.476 |
39DAP/27DAP | 1.05166 | 0.691 |
41DAP/39DAP | 0.98816 | 0.973 |
42DAP/41DAP | 0.91929 | 0.52 |
43DAP/42DAP | 0.98689 | 0.875 |
47DAP/43DAP | 0.9668 | 0.855 |
52DAP/47DAP | 0.97014 | 0.893 |
57DAP/52DAP | 1.01722 | 1 |
57DAP/7DAP | 0.96332 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22434 | 0.09 |
17DAP/reference | 1.01561 | 1 |
27DAP/reference | 0.95125 | 0.2 |
39DAP/reference | 0.92856 | 0.146 |
41DAP/reference | 1.04251 | 1 |
42DAP/reference | 0.92037 | 0.262 |
43DAP/reference | 0.98584 | 0.527 |
47DAP/reference | 0.74255 | 0.044 |
52DAP/reference | 0.88806 | 0.179 |
57DAP/reference | 0.86928 | 0.069 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18835 | 0.3 |
17DAP/reference | 0.74643 | 0.007 |
27DAP/reference | 0.88343 | 0.108 |
39DAP/reference | 0.77464 | 0.019 |
41DAP/reference | 0.85601 | 0.118 |
42DAP/reference | 0.7933 | 0.037 |
43DAP/reference | 0.70966 | 0.013 |
47DAP/reference | 0.83114 | 0.01 |
52DAP/reference | 0.77058 | 0.005 |
57DAP/reference | 0.70805 | 0.006 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12587 | 0.32 |
17DAP/reference | 0.93956 | 0.499 |
27DAP/reference | 1.07455 | 0.408 |
39DAP/reference | 1.00786 | 0.889 |
41DAP/reference | 0.93548 | 0.371 |
42DAP/reference | 1.04935 | 1 |
43DAP/reference | 0.98658 | 0.639 |
47DAP/reference | 0.79761 | 0.005 |
52DAP/reference | 0.90096 | 0.376 |
57DAP/reference | 1.34036 | 0.192 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0238 | 1 |
26DAP/20DAP | 1.9382 | 0.097 |
34DAP/26DAP | 0.64913 | 0.093 |
51DAP/34DAP | 0.89049 | 0.703 |
52DAP/51DAP | 1.24947 | 0.446 |
53DAP/52DAP | 0.87488 | 0.604 |
55DAP/53DAP | 1.03579 | 1 |
57DAP/55DAP | 1.452 | 0.543 |
62DAP/57DAP | 1.28724 | 0.257 |
68DAP/62DAP | 1.0818 | 0.931 |
68DAP/14DAP | 6.41989 | 0.265 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.21648 | 0.782 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.00807 | 0.826 |
Mature Green Tomato/Ripe Tomato | 0.82175 | 0.446 |
Immature Eggplant/Mature Eggplant | 0.564 | 0.062 |
Ripe Pepper/Ripe Tomato | 0.20001 | |
Mature Eggplant/Ripe Tomato | 1.36678 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.46682 | 0.591 |
1-1-2/M82 | 1.11123 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 2.84811 | 1 |
1-3/M82 | 1.40632 | |
2-1-1/M82 | 0.98947 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.95436 | |
4-1-1/M82 | 1.21005 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.80414 | |
4-3/M82 | 1.11738 | 1 |
5-3/M82 | 1.15584 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.12719 | 1 |
7-1/M82 | 1.07098 | |
7-2/M82 | 0.94477 | |
9-3-2/M82 | 1.31221 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.76119 | 0.247 |
IL2-6/WTpooled | 2.93669 | 0.419 |
IL7-5/WTpooled | 1.33436 | 1 |
IL7-3/WTpooled | 0.54002 | 0.294 |
IL12-4/WTpooled | 1.67823 | 0.785 |
IL1-4/WTpooled | 1.17825 | 1 |
WT/WTpooled | 0.99065 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12141 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.89724 | 0.664 |
DC3000/delta hrp 6h | 1.05436 | 1 |
DC3000/delta hrp 12h | 0.8415 | 1 |
DC3000/delta hrp 24h | 1.18574 | 0.322 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.74373 | 0.365 |
DC3000 delta B/DC3000 delta AB | 0.73395 | 0.075 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.86651 | 1 |
Exp 36h | 0.7021 | 0.449 |
Exp 60h | 0.68634 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93079 | 1 |
Var 0h | 1.11624 | 1 |
Var 12h I row2-row1 | 1.214 | 0.224 |
Var 12h NI row2-row1 | 1.05294 | 1 |
Var 36h I row2-row1 | 0.7539 | 1 |
Var 36h NI row2-row1 | 1.02295 | 1 |
Var 60h I row2-row1 | 1.19663 | |
Var 60h NI row2-row1 | 3.6492 | 0.904 |
Time course 0hI-0hNI | 1.01016 | 1 |
Time course 12hI-12hNI | 1.07357 | 0.633 |
Time course 36hI-36hNI | 1.22409 | 0.015 |
Time course 60hI-60hNI | 1.34059 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92903 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.90042 | 0.142 |
transgenic ySAMdc/azygous control (red) | 1.13622 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91102 | 0.046 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.39595 | 0.227 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.05596 | 0.096 |
Manapal/WT (break) | 1.4914 | 0.381 |
Manapal/WT (red) | 1.56618 | 0.222 |
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