Expression of 1-1-5.2.15.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78393 | 0.159 |
27DAP/17DAP | 1.19608 | 0.799 |
39DAP/27DAP | 1.16892 | 0.91 |
41DAP/39DAP | 1.14924 | 0.814 |
42DAP/41DAP | 0.72914 | 0.397 |
43DAP/42DAP | 1.7065 | 0.288 |
47DAP/43DAP | 0.73913 | 0.245 |
52DAP/47DAP | 1.32015 | 0.468 |
57DAP/52DAP | 0.8699 | 0.852 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91539 | 0.136 |
17DAP/reference | 0.89524 | 0.053 |
27DAP/reference | 1.04868 | 0.759 |
39DAP/reference | 1.0001 | 1 |
41DAP/reference | 0.91974 | 0.341 |
42DAP/reference | 1.06825 | 0.032 |
43DAP/reference | 0.97745 | 0.653 |
47DAP/reference | 1.02941 | 0.752 |
52DAP/reference | 1.24274 | 0.076 |
57DAP/reference | 1.28969 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.67169 | 0.048 |
27DAP/17DAP | 1.22961 | 0.218 |
39DAP/27DAP | 1.18966 | 0.173 |
41DAP/39DAP | 0.75414 | 0.013 |
42DAP/41DAP | 0.98806 | 0.83 |
43DAP/42DAP | 1.04692 | 0.513 |
47DAP/43DAP | 1.04661 | 0.678 |
52DAP/47DAP | 1.01064 | 0.986 |
57DAP/52DAP | 1.13518 | 0.352 |
57DAP/7DAP | 0.75497 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94356 | 0.326 |
17DAP/reference | 0.81307 | 0.019 |
27DAP/reference | 0.8436 | 0.014 |
39DAP/reference | 0.82871 | 0.015 |
41DAP/reference | 0.85167 | 0.049 |
42DAP/reference | 0.80633 | 0.017 |
43DAP/reference | 0.75622 | 0.011 |
47DAP/reference | 0.91409 | 0.293 |
52DAP/reference | 0.7339 | 0.014 |
57DAP/reference | 0.77037 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08136 | 0.491 |
17DAP/reference | 0.82221 | 0.047 |
27DAP/reference | 0.91425 | 0.249 |
39DAP/reference | 0.86118 | 0.067 |
41DAP/reference | 0.88686 | 0.083 |
42DAP/reference | 1.02621 | 0.987 |
43DAP/reference | 1.05919 | 0.817 |
47DAP/reference | 1.02559 | 1 |
52DAP/reference | 0.91174 | 0.034 |
57DAP/reference | 0.88872 | 0.046 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8539 | 0.057 |
17DAP/reference | 0.92621 | 0.462 |
27DAP/reference | 0.74726 | 0.038 |
39DAP/reference | 0.73625 | 0.02 |
41DAP/reference | 0.84674 | 0.132 |
42DAP/reference | 0.89648 | 0.287 |
43DAP/reference | 0.88072 | 0.158 |
47DAP/reference | 1.05923 | 0.901 |
52DAP/reference | 0.76526 | 0.145 |
57DAP/reference | 1.1055 | 0.604 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.82371 | 0.841 |
26DAP/20DAP | 1.32651 | 0.15 |
34DAP/26DAP | 0.95566 | 0.944 |
51DAP/34DAP | 0.99932 | 0.96 |
52DAP/51DAP | 1.20611 | 0.041 |
53DAP/52DAP | 0.73155 | 0.049 |
55DAP/53DAP | 1.05166 | 0.834 |
57DAP/55DAP | 0.97829 | 0.863 |
62DAP/57DAP | 1.46157 | 0.011 |
68DAP/62DAP | 0.73635 | 0.378 |
68DAP/14DAP | 1.35523 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97228 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.08236 | 0.089 |
Mature Green Tomato/Ripe Tomato | 0.69987 | 0.051 |
Immature Eggplant/Mature Eggplant | 0.54556 | 0.063 |
Ripe Pepper/Ripe Tomato | 0.56757 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.67268 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.13677 | 0.473 |
1-1-2/M82 | 0.98179 | 1 |
12-2/M82 | 1.08744 | 1 |
12-4/M82 | 1.01706 | 1 |
1-3/M82 | 1.13914 | 0.26 |
2-1-1/M82 | 1.0446 | 1 |
2-1/M82 | 1.05871 | 1 |
2-6/M82 | 1.0853 | 1 |
3-2/M82 | 0.98573 | |
4-1-1/M82 | 1.07045 | 1 |
4-1/M82 | 1.21598 | 0.319 |
4-3-2/M82 | 0.94025 | 1 |
4-3/M82 | 1.18828 | 1 |
5-3/M82 | 1.0042 | 1 |
6-2/M82 | 0.85961 | 0.473 |
6-3/M82 | 1.03606 | 1 |
7-1/M82 | 0.84459 | |
7-2/M82 | 1.05524 | 0.385 |
9-3-2/M82 | 1.04171 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.13953 | |
IL2-6/WTpooled | 1.09049 | 0.531 |
IL7-5/WTpooled | 0.68872 | |
IL7-3/WTpooled | 1.0194 | 0.362 |
IL12-4/WTpooled | 1.17212 | 0.646 |
IL1-4/WTpooled | 0.91722 | 0.834 |
WT/WTpooled | 1.00416 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00806 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97011 | 1 |
DC3000/delta hrp 6h | 0.99912 | 0.95 |
DC3000/delta hrp 12h | 1.13926 | 1 |
DC3000/delta hrp 24h | 0.93888 | 0.523 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.58177 | 0.032 |
DC3000 delta B/DC3000 delta AB | 1.13812 | 0.406 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89095 | 1 |
Exp 36h | 0.87802 | 0.749 |
Exp 60h | 1.16582 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98249 | 1 |
Var 0h | 0.98154 | 1 |
Var 12h I row2-row1 | 1.07437 | 0.242 |
Var 12h NI row2-row1 | 0.93279 | 0.713 |
Var 36h I row2-row1 | 0.73793 | 0.805 |
Var 36h NI row2-row1 | 1.01945 | 1 |
Var 60h I row2-row1 | 1.74089 | 0.562 |
Var 60h NI row2-row1 | 1.11851 | 0.904 |
Time course 0hI-0hNI | 1.0161 | 0.867 |
Time course 12hI-12hNI | 0.99945 | 1 |
Time course 36hI-36hNI | 1.13663 | 0.05 |
Time course 60hI-60hNI | 1.14707 | 0.096 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9759 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 2.18491 | 0.161 |
transgenic ySAMdc/azygous control (red) | 1.04947 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01775 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.48441 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.40536 | 0.14 |
Manapal/WT (break) | 0.78344 | 0.333 |
Manapal/WT (red) | 0.8473 | 0.188 |
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