Expression of 1-1-5.2.15.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01207 | 0.938 |
27DAP/17DAP | 0.90991 | 0.766 |
39DAP/27DAP | 0.91446 | 0.652 |
41DAP/39DAP | 1.03294 | 0.976 |
42DAP/41DAP | 1.19574 | 0.672 |
43DAP/42DAP | 1.33893 | 0.676 |
47DAP/43DAP | 1.15398 | 0.668 |
52DAP/47DAP | 0.96064 | 0.694 |
57DAP/52DAP | 1.21529 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87047 | 0.087 |
17DAP/reference | 0.96523 | 0.448 |
27DAP/reference | 0.96796 | 0.567 |
39DAP/reference | 1.02291 | 0.628 |
41DAP/reference | 1.0352 | 0.48 |
42DAP/reference | 0.98772 | 0.425 |
43DAP/reference | 1.02343 | 0.646 |
47DAP/reference | 0.93378 | 0.116 |
52DAP/reference | 0.99986 | 0.668 |
57DAP/reference | 1.00516 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05969 | 1 |
27DAP/17DAP | 1.01645 | 0.969 |
39DAP/27DAP | 1.06751 | 0.698 |
41DAP/39DAP | 1.02522 | 1 |
42DAP/41DAP | 0.98819 | 0.83 |
43DAP/42DAP | 1.13789 | 0.446 |
47DAP/43DAP | 1.00855 | 1 |
52DAP/47DAP | 0.91055 | 0.624 |
57DAP/52DAP | 0.92806 | 0.488 |
57DAP/7DAP | 0.83618 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92574 | 0.296 |
17DAP/reference | 0.80496 | 0.014 |
27DAP/reference | 0.91134 | 0.058 |
39DAP/reference | 0.93575 | 0.064 |
41DAP/reference | 0.87753 | 0.023 |
42DAP/reference | 0.97797 | 0.506 |
43DAP/reference | 0.94113 | 0.23 |
47DAP/reference | 0.9269 | 0.293 |
52DAP/reference | 0.93832 | 0.196 |
57DAP/reference | 0.91772 | 0.156 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06755 | 0.62 |
17DAP/reference | 0.9412 | 0.434 |
27DAP/reference | 0.95882 | 0.438 |
39DAP/reference | 0.87036 | 0.093 |
41DAP/reference | 0.85088 | 0.044 |
42DAP/reference | 0.91774 | 0.261 |
43DAP/reference | 1.1906 | 0.279 |
47DAP/reference | 1.11924 | 0.212 |
52DAP/reference | 0.9531 | 0.22 |
57DAP/reference | 1.10442 | 0.567 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90247 | 0.147 |
17DAP/reference | 0.9801 | 0.658 |
27DAP/reference | 0.84389 | 0.081 |
39DAP/reference | 0.84895 | 0.04 |
41DAP/reference | 0.86057 | 0.035 |
42DAP/reference | 0.89004 | 0.134 |
43DAP/reference | 0.8735 | 0.125 |
47DAP/reference | 1.09828 | 0.294 |
52DAP/reference | 0.89199 | 0.376 |
57DAP/reference | 0.82433 | 0.043 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95059 | 1 |
26DAP/20DAP | 0.95324 | 0.512 |
34DAP/26DAP | 0.74938 | 0.095 |
51DAP/34DAP | 0.96884 | 0.779 |
52DAP/51DAP | 1.2631 | 0.103 |
53DAP/52DAP | 1.00847 | 1 |
55DAP/53DAP | 1.06515 | 0.771 |
57DAP/55DAP | 1.18833 | 0.818 |
62DAP/57DAP | 1.2119 | 0.057 |
68DAP/62DAP | 1.45826 | 0.539 |
68DAP/14DAP | 0.45956 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89664 | 0.358 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.0807 | |
Mature Green Tomato/Ripe Tomato | 0.70303 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.31578 | |
Mature Eggplant/Ripe Tomato | 0.51548 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9745 | 0.944 |
1-1-2/M82 | 0.98161 | 1 |
12-2/M82 | 1.34245 | 0.421 |
12-4/M82 | 1.12953 | 1 |
1-3/M82 | 0.96911 | 0.501 |
2-1-1/M82 | 0.93367 | 0.565 |
2-1/M82 | 1.16015 | 0.271 |
2-6/M82 | 1.16515 | 0.505 |
3-2/M82 | 1.10989 | |
4-1-1/M82 | 1.1131 | 1 |
4-1/M82 | 1.38588 | |
4-3-2/M82 | 1.01496 | |
4-3/M82 | 0.87867 | 0.72 |
5-3/M82 | 1.01922 | 1 |
6-2/M82 | 0.88087 | 1 |
6-3/M82 | 1.00779 | 1 |
7-1/M82 | 0.80166 | |
7-2/M82 | 1.08594 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.14847 | 0.584 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.745 | 0.418 |
IL12-4/WTpooled | 0.91653 | 1 |
IL1-4/WTpooled | 0.98324 | |
WT/WTpooled | 1.09469 | 0.911 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95276 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09477 | 0.921 |
DC3000/delta hrp 6h | 1.32451 | 0.978 |
DC3000/delta hrp 12h | 1.03472 | 1 |
DC3000/delta hrp 24h | 0.97161 | 0.831 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.93202 | 0.787 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.01268 | 1 |
Exp 60h | 0.87529 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97331 | 1 |
Var 0h | 0.99388 | 1 |
Var 12h I row2-row1 | 1.17988 | 0.443 |
Var 12h NI row2-row1 | 0.79798 | 0.488 |
Var 36h I row2-row1 | 0.8817 | 0.805 |
Var 36h NI row2-row1 | 0.9899 | 0.852 |
Var 60h I row2-row1 | 1.03102 | 1 |
Var 60h NI row2-row1 | 1.26222 | 0.904 |
Time course 0hI-0hNI | 1.11687 | 0.662 |
Time course 12hI-12hNI | 1.01092 | 0.892 |
Time course 36hI-36hNI | 1.03477 | 0.651 |
Time course 60hI-60hNI | 1.31931 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96787 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 1.7242 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.07273 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02787 | 0.17 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0753 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0911 | 1 |
Manapal/WT (break) | 1.14056 | 1 |
Manapal/WT (red) | 1.10781 | 0.413 |
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