Expression of 1-1-5.2.15.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.012070.938
27DAP/17DAP0.909910.766
39DAP/27DAP0.914460.652
41DAP/39DAP1.032940.976
42DAP/41DAP1.195740.672
43DAP/42DAP1.338930.676
47DAP/43DAP1.153980.668
52DAP/47DAP0.960640.694
57DAP/52DAP1.215290.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.870470.087
17DAP/reference0.965230.448
27DAP/reference0.967960.567
39DAP/reference1.022910.628
41DAP/reference1.03520.48
42DAP/reference0.987720.425
43DAP/reference1.023430.646
47DAP/reference0.933780.116
52DAP/reference0.999860.668
57DAP/reference1.005161

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.059691
27DAP/17DAP1.016450.969
39DAP/27DAP1.067510.698
41DAP/39DAP1.025221
42DAP/41DAP0.988190.83
43DAP/42DAP1.137890.446
47DAP/43DAP1.008551
52DAP/47DAP0.910550.624
57DAP/52DAP0.928060.488
57DAP/7DAP0.836181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.925740.296
17DAP/reference0.804960.014
27DAP/reference0.911340.058
39DAP/reference0.935750.064
41DAP/reference0.877530.023
42DAP/reference0.977970.506
43DAP/reference0.941130.23
47DAP/reference0.92690.293
52DAP/reference0.938320.196
57DAP/reference0.917720.156

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.067550.62
17DAP/reference0.94120.434
27DAP/reference0.958820.438
39DAP/reference0.870360.093
41DAP/reference0.850880.044
42DAP/reference0.917740.261
43DAP/reference1.19060.279
47DAP/reference1.119240.212
52DAP/reference0.95310.22
57DAP/reference1.104420.567

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902470.147
17DAP/reference0.98010.658
27DAP/reference0.843890.081
39DAP/reference0.848950.04
41DAP/reference0.860570.035
42DAP/reference0.890040.134
43DAP/reference0.87350.125
47DAP/reference1.098280.294
52DAP/reference0.891990.376
57DAP/reference0.824330.043

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.950591
26DAP/20DAP0.953240.512
34DAP/26DAP0.749380.095
51DAP/34DAP0.968840.779
52DAP/51DAP1.26310.103
53DAP/52DAP1.008471
55DAP/53DAP1.065150.771
57DAP/55DAP1.188330.818
62DAP/57DAP1.21190.057
68DAP/62DAP1.458260.539
68DAP/14DAP0.459560.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.896640.358

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.0807
Mature Green Tomato/Ripe Tomato0.703030.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.31578
Mature Eggplant/Ripe Tomato0.51548

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.97450.944
1-1-2/M820.981611
12-2/M821.342450.421
12-4/M821.129531
1-3/M820.969110.501
2-1-1/M820.933670.565
2-1/M821.160150.271
2-6/M821.165150.505
3-2/M821.10989
4-1-1/M821.11311
4-1/M821.38588
4-3-2/M821.01496
4-3/M820.878670.72
5-3/M821.019221
6-2/M820.880871
6-3/M821.007791
7-1/M820.80166
7-2/M821.085941
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.148470.584
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.7450.418
IL12-4/WTpooled0.916531
IL1-4/WTpooled0.98324
WT/WTpooled1.094690.911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.952761

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.094770.921
DC3000/delta hrp 6h1.324510.978
DC3000/delta hrp 12h1.034721
DC3000/delta hrp 24h0.971610.831

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.932020.787

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.012681
Exp 60h0.875290.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.973311
Var 0h0.993881
Var 12h I row2-row11.179880.443
Var 12h NI row2-row10.797980.488
Var 36h I row2-row10.88170.805
Var 36h NI row2-row10.98990.852
Var 60h I row2-row11.031021
Var 60h NI row2-row11.262220.904
Time course 0hI-0hNI1.116870.662
Time course 12hI-12hNI1.010920.892
Time course 36hI-36hNI1.034770.651
Time course 60hI-60hNI1.319310.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967870.299
transgenic ySAMdc/azygous control (breaker)1.72420.166
transgenic ySAMdc/azygous control (red)1.072730.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.027870.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.07531

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.09111
Manapal/WT (break)1.140561
Manapal/WT (red)1.107810.413