Expression of 1-1-5.2.16.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.016240.858
27DAP/17DAP1.988030.25
39DAP/27DAP1.616830.387
41DAP/39DAP1.019660.946
42DAP/41DAP1.07780.978
43DAP/42DAP0.99220.918
47DAP/43DAP1.032360.876
52DAP/47DAP1.553750.245
57DAP/52DAP1.369460.859

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.269330.041
17DAP/reference1.062350.843
27DAP/reference0.798090.023
39DAP/reference0.865130.284
41DAP/reference0.801780.154
42DAP/reference1.178910.002
43DAP/reference1.017320.861
47DAP/reference0.886170.009
52DAP/reference0.698770.031
57DAP/reference0.947370.138

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.776620.09
27DAP/17DAP0.763620.187
39DAP/27DAP1.665130.061
41DAP/39DAP1.836370.009
42DAP/41DAP0.516260.011
43DAP/42DAP1.420690.017
47DAP/43DAP1.028850.951
52DAP/47DAP1.889330.048
57DAP/52DAP1.954790.029
57DAP/7DAP2.10660.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.260660.056
17DAP/reference1.092240.077
27DAP/reference1.179060.03
39DAP/reference0.897050.073
41DAP/reference0.967580.449
42DAP/reference1.00530.675
43DAP/reference0.939260.183
47DAP/reference1.142160.112
52DAP/reference1.067540.491
57DAP/reference1.076920.308

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.118030.62
17DAP/reference1.420530.013
27DAP/reference1.025670.735
39DAP/reference0.841510.02
41DAP/reference1.114580.209
42DAP/reference1.242170.011
43DAP/reference0.919930.336
47DAP/reference1.092760.332
52DAP/reference0.67590.004
57DAP/reference0.743150.015

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.063070.659
17DAP/reference0.97450.615
27DAP/reference1.017140.834
39DAP/reference1.146450.03
41DAP/reference1.085850.818
42DAP/reference1.029710.818
43DAP/reference1.080640.688
47DAP/reference0.719180.006
52DAP/reference0.997270.871
57DAP/reference0.859150.092

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.05411
26DAP/20DAP0.762730.317
34DAP/26DAP0.796670.343
51DAP/34DAP1.269540.232
52DAP/51DAP0.898751
53DAP/52DAP1.479480.121
55DAP/53DAP0.802870.592
57DAP/55DAP1.231110.348
62DAP/57DAP0.890090.466
68DAP/62DAP1.085330.971
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker5.309340.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.872060.364
Mature Green Tomato/Ripe Tomato0.345850.017
Immature Eggplant/Mature Eggplant0.905080.176
Ripe Pepper/Ripe Tomato0.826221
Mature Eggplant/Ripe Tomato0.999011

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.82825
12-2/M82N/AN/A
12-4/M821.273061
1-3/M821.134271
2-1-1/M821.35571
2-1/M820.86042
2-6/M821.39915
3-2/M821.103440.967
4-1-1/M821.14602
4-1/M821.81043
4-3-2/M821.862670.284
4-3/M821.049731
5-3/M820.968411
6-2/M821.59724
6-3/M820.863391
7-1/M820.8999
7-2/M820.93053
9-3-2/M821.356371

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.078340.493
IL2-6/WTpooled1.240550.456
IL7-5/WTpooled0.672821
IL7-3/WTpooled0.905671
IL12-4/WTpooled1.171830.785
IL1-4/WTpooled1.207590.426
WT/WTpooled0.956231

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.223341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.017961
DC3000/delta hrp 6h1.195921
DC3000/delta hrp 12h0.818851
DC3000/delta hrp 24h1.14610.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.593940.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.05791
Exp 36h1.082741
Exp 60h1.422440.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.022461
Var 0h0.898481
Var 12h I row2-row11.163750.324
Var 12h NI row2-row11.037791
Var 36h I row2-row11.100850.908
Var 36h NI row2-row11.234640.482
Var 60h I row2-row11.111921
Var 60h NI row2-row11.031821
Time course 0hI-0hNI1.105130.603
Time course 12hI-12hNI1.660280.005
Time course 36hI-36hNI2.334430.005
Time course 60hI-60hNI2.796780.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.179110.261
transgenic ySAMdc/azygous control (breaker)1.246091
transgenic ySAMdc/azygous control (red)1.180730.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.156970.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.843310.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.412210.307
Manapal/WT (break)0.974471
Manapal/WT (red)1.312290.222