Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.2.17.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.90081	0.464
27DAP/17DAP	2.09849	0.783
39DAP/27DAP	0.94053	0.652
41DAP/39DAP	1.42262	0.511
42DAP/41DAP	1.33233	0.873
43DAP/42DAP	0.97878	0.925
47DAP/43DAP	5.91944	0.187
52DAP/47DAP	2.89264	0.215
57DAP/52DAP	1.81415	0.746

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.77211	0.039
17DAP/reference	0.66434	0.007
27DAP/reference	0.78962	0.015
39DAP/reference	0.77887	0.022
41DAP/reference	0.6535	0.008
42DAP/reference	0.99791	0.547
43DAP/reference	0.86757	0.054
47DAP/reference	1.77141	0.018
52DAP/reference	3.56429	0.007
57DAP/reference	2.26112	0.008

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.77386	0.228
27DAP/17DAP	1.65264
39DAP/27DAP	0.8675	0.55
41DAP/39DAP	0.80559	0.412
42DAP/41DAP	0.90562	0.617
43DAP/42DAP	1.02796	0.83
47DAP/43DAP	1.17032	0.464
52DAP/47DAP	1.22011	0.424
57DAP/52DAP	0.54839	0.156
57DAP/7DAP	0.66158	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.61994	0.069
17DAP/reference	0.77076	0.018
27DAP/reference	0.78099	0.033
39DAP/reference	0.67641	0.013
41DAP/reference	0.753	0.032
42DAP/reference	0.86939	0.117
43DAP/reference	0.80685	0.014
47DAP/reference	0.78905	0.128
52DAP/reference	0.66129	0.022
57DAP/reference	0.57875	0.008

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.65147	0.007
17DAP/reference	0.77173	0.016
27DAP/reference	0.96206	0.438
39DAP/reference	1.02688	1
41DAP/reference	1.08206	0.766
42DAP/reference	1.12787	0.207
43DAP/reference	0.97014	0.527
47DAP/reference	0.9281	0.154
52DAP/reference	0.95763	0.327
57DAP/reference	0.73321	0.014

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.72862	0.049
17DAP/reference	0.78272	0.097
27DAP/reference	0.81481	0.069
39DAP/reference	0.85593	0.046
41DAP/reference	0.90476	0.209
42DAP/reference	0.94511	0.445
43DAP/reference	1.11094	0.432
47DAP/reference	0.95066	0.357
52DAP/reference	1.01327	1
57DAP/reference	3.30281	0.009

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.98205	1
26DAP/20DAP	0.64839	0.244
34DAP/26DAP	1.18635	1
51DAP/34DAP	0.73139
52DAP/51DAP	0.76451	1
53DAP/52DAP	1.10571	0.697
55DAP/53DAP	1.7574	0.052
57DAP/55DAP	1.10677	0.865
62DAP/57DAP	1.17615	0.868
68DAP/62DAP	1.43316	0.132
68DAP/14DAP	1.27976	0.094

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.71617	0.304

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.0336	0.017
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	0.07144	0.224
Mature Eggplant/Ripe Tomato	0.02386	0.234

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.3274
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.12237	1
1-3/M82	0.57344
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	0.87156	1
3-2/M82	0.93934
4-1-1/M82	N/A	N/A
4-1/M82	1.97032
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	0.951	1
6-2/M82	N/A	N/A
6-3/M82	1.46773
7-1/M82	N/A	N/A
7-2/M82	0.67495
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	2.74325	0.365
IL2-6/WTpooled	0.61501	0.473
IL7-5/WTpooled	1.11471	0.792
IL7-3/WTpooled	1.24523	1
IL12-4/WTpooled	1.36983	0.646
IL1-4/WTpooled	1.00987	1
WT/WTpooled	1.01079	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.08214	0.894
DC3000/delta hrp 6h	0.82538	0.95
DC3000/delta hrp 12h	0.96588	1
DC3000/delta hrp 24h	0.9511	0.564

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.95646	1
Exp 36h	N/A	N/A
Exp 60h	1.14989	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.16857	0.98
Var 12h I row2-row1	1.24772	0.348
Var 12h NI row2-row1	0.92931	0.906
Var 36h I row2-row1	1.01262
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	0.97635	1
Var 60h NI row2-row1	1.60772	0.904
Time course 0hI-0hNI	1.44367
Time course 12hI-12hNI	1.33769	0.663
Time course 36hI-36hNI	0.93192	0.559
Time course 60hI-60hNI	4.06625	0.302

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.2815	0.372
transgenic ySAMdc/azygous control (breaker)	1.08455	0.248
transgenic ySAMdc/azygous control (red)	0.9757	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.51175	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.06204	1
Manapal/WT (break)	0.96409	1
Manapal/WT (red)	1.04183	1