Expression of 1-1-5.2.19.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.740670.162
27DAP/17DAP1.157560.841
39DAP/27DAP0.949920.663
41DAP/39DAP0.90660.611
42DAP/41DAP1.06110.929
43DAP/42DAP0.992440.937
47DAP/43DAP0.760850.29
52DAP/47DAP0.98210.903
57DAP/52DAP1.024411

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.043930.707
17DAP/reference1.138690.528
27DAP/reference1.501670.357
39DAP/reference1.531890.026
41DAP/reference1.762450.026
42DAP/reference1.602410.013
43DAP/reference0.803860.346
47DAP/reference1.306130.223
52DAP/reference1.41330.024
57DAP/reference1.58398

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.137260.271
27DAP/17DAP1.064030.775
39DAP/27DAP1.533540.465
41DAP/39DAP0.965930.875
42DAP/41DAP0.994060.84
43DAP/42DAP1.102320.324
47DAP/43DAP1.05810.788
52DAP/47DAP1.023620.907
57DAP/52DAP1.129030.657
57DAP/7DAP1.099731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.990440.682
17DAP/reference1.102080.574
27DAP/reference1.100320.974
39DAP/reference0.978260.474
41DAP/reference0.955970.394
42DAP/reference1.219460.233
43DAP/reference1.033140.694
47DAP/reference1.085750.901
52DAP/reference0.999690.679
57DAP/reference1.003850.719

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.549580.146
17DAP/reference1.235860.053
27DAP/reference1.201020.288
39DAP/reference1.324960.018
41DAP/reference1.284850.058
42DAP/reference1.515950.019
43DAP/reference1.21050.673
47DAP/reference1.264970.059
52DAP/reference0.976190.5
57DAP/reference1.321450.06

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.941880.335
17DAP/reference1.200190.337
27DAP/reference0.936730.243
39DAP/reference1.095990.483
41DAP/reference1.075140.637
42DAP/reference1.361480.063
43DAP/reference1.918430.089
47DAP/reference1.350390.081
52DAP/reference1.083350.79
57DAP/reference1.362460.048

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.825930.981
26DAP/20DAP0.902160.512
34DAP/26DAP1.046841
51DAP/34DAP1.071380.936
52DAP/51DAP1.205750.396
53DAP/52DAP0.996740.909
55DAP/53DAP1.277170.15
57DAP/55DAP0.891220.506
62DAP/57DAP0.800150.466
68DAP/62DAP1.014150.863
68DAP/14DAP1.80962

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.03990.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.836240.418
Mature Green Tomato/Ripe Tomato0.949520.66
Immature Eggplant/Mature Eggplant1.383510.181
Ripe Pepper/Ripe Tomato0.551340.224
Mature Eggplant/Ripe Tomato0.398610.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.007261
1-1-2/M821.291041
12-2/M821.297980.327
12-4/M820.924951
1-3/M821.30411
2-1-1/M820.53275
2-1/M82N/AN/A
2-6/M820.87891
3-2/M820.94684
4-1-1/M821.100671
4-1/M820.786070.737
4-3-2/M821.163380.284
4-3/M821.353130.268
5-3/M821.109411
6-2/M821.196821
6-3/M821.043481
7-1/M821.123970.598
7-2/M820.929070.57
9-3-2/M821.282511

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.835431
IL2-6/WTpooled0.83025
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.92749
IL12-4/WTpooled1.387780.516
IL1-4/WTpooled1.005991
WT/WTpooled1.03921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.937910.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.080960.894
DC3000/delta hrp 6h1.140551
DC3000/delta hrp 12h1.224991
DC3000/delta hrp 24h0.953550.629

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.01850.556
DC3000 delta B/DC3000 delta AB1.059720.558

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.953761
Exp 36hN/AN/A
Exp 60h1.195880.171

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.82421
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.052370.798
transgenic ySAMdc/azygous control (breaker)0.611560.15
transgenic ySAMdc/azygous control (red)1.328440.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.956450.277

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.767450.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.988011
Manapal/WT (break)0.974351
Manapal/WT (red)0.851950.188