Expression of 1-1-5.2.19.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.74067 | 0.162 |
27DAP/17DAP | 1.15756 | 0.841 |
39DAP/27DAP | 0.94992 | 0.663 |
41DAP/39DAP | 0.9066 | 0.611 |
42DAP/41DAP | 1.0611 | 0.929 |
43DAP/42DAP | 0.99244 | 0.937 |
47DAP/43DAP | 0.76085 | 0.29 |
52DAP/47DAP | 0.9821 | 0.903 |
57DAP/52DAP | 1.02441 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04393 | 0.707 |
17DAP/reference | 1.13869 | 0.528 |
27DAP/reference | 1.50167 | 0.357 |
39DAP/reference | 1.53189 | 0.026 |
41DAP/reference | 1.76245 | 0.026 |
42DAP/reference | 1.60241 | 0.013 |
43DAP/reference | 0.80386 | 0.346 |
47DAP/reference | 1.30613 | 0.223 |
52DAP/reference | 1.4133 | 0.024 |
57DAP/reference | 1.58398 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13726 | 0.271 |
27DAP/17DAP | 1.06403 | 0.775 |
39DAP/27DAP | 1.53354 | 0.465 |
41DAP/39DAP | 0.96593 | 0.875 |
42DAP/41DAP | 0.99406 | 0.84 |
43DAP/42DAP | 1.10232 | 0.324 |
47DAP/43DAP | 1.0581 | 0.788 |
52DAP/47DAP | 1.02362 | 0.907 |
57DAP/52DAP | 1.12903 | 0.657 |
57DAP/7DAP | 1.09973 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99044 | 0.682 |
17DAP/reference | 1.10208 | 0.574 |
27DAP/reference | 1.10032 | 0.974 |
39DAP/reference | 0.97826 | 0.474 |
41DAP/reference | 0.95597 | 0.394 |
42DAP/reference | 1.21946 | 0.233 |
43DAP/reference | 1.03314 | 0.694 |
47DAP/reference | 1.08575 | 0.901 |
52DAP/reference | 0.99969 | 0.679 |
57DAP/reference | 1.00385 | 0.719 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54958 | 0.146 |
17DAP/reference | 1.23586 | 0.053 |
27DAP/reference | 1.20102 | 0.288 |
39DAP/reference | 1.32496 | 0.018 |
41DAP/reference | 1.28485 | 0.058 |
42DAP/reference | 1.51595 | 0.019 |
43DAP/reference | 1.2105 | 0.673 |
47DAP/reference | 1.26497 | 0.059 |
52DAP/reference | 0.97619 | 0.5 |
57DAP/reference | 1.32145 | 0.06 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94188 | 0.335 |
17DAP/reference | 1.20019 | 0.337 |
27DAP/reference | 0.93673 | 0.243 |
39DAP/reference | 1.09599 | 0.483 |
41DAP/reference | 1.07514 | 0.637 |
42DAP/reference | 1.36148 | 0.063 |
43DAP/reference | 1.91843 | 0.089 |
47DAP/reference | 1.35039 | 0.081 |
52DAP/reference | 1.08335 | 0.79 |
57DAP/reference | 1.36246 | 0.048 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.82593 | 0.981 |
26DAP/20DAP | 0.90216 | 0.512 |
34DAP/26DAP | 1.04684 | 1 |
51DAP/34DAP | 1.07138 | 0.936 |
52DAP/51DAP | 1.20575 | 0.396 |
53DAP/52DAP | 0.99674 | 0.909 |
55DAP/53DAP | 1.27717 | 0.15 |
57DAP/55DAP | 0.89122 | 0.506 |
62DAP/57DAP | 0.80015 | 0.466 |
68DAP/62DAP | 1.01415 | 0.863 |
68DAP/14DAP | 1.80962 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0399 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.83624 | 0.418 |
Mature Green Tomato/Ripe Tomato | 0.94952 | 0.66 |
Immature Eggplant/Mature Eggplant | 1.38351 | 0.181 |
Ripe Pepper/Ripe Tomato | 0.55134 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.39861 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00726 | 1 |
1-1-2/M82 | 1.29104 | 1 |
12-2/M82 | 1.29798 | 0.327 |
12-4/M82 | 0.92495 | 1 |
1-3/M82 | 1.3041 | 1 |
2-1-1/M82 | 0.53275 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.8789 | 1 |
3-2/M82 | 0.94684 | |
4-1-1/M82 | 1.10067 | 1 |
4-1/M82 | 0.78607 | 0.737 |
4-3-2/M82 | 1.16338 | 0.284 |
4-3/M82 | 1.35313 | 0.268 |
5-3/M82 | 1.10941 | 1 |
6-2/M82 | 1.19682 | 1 |
6-3/M82 | 1.04348 | 1 |
7-1/M82 | 1.12397 | 0.598 |
7-2/M82 | 0.92907 | 0.57 |
9-3-2/M82 | 1.28251 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83543 | 1 |
IL2-6/WTpooled | 0.83025 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92749 | |
IL12-4/WTpooled | 1.38778 | 0.516 |
IL1-4/WTpooled | 1.00599 | 1 |
WT/WTpooled | 1.0392 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93791 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08096 | 0.894 |
DC3000/delta hrp 6h | 1.14055 | 1 |
DC3000/delta hrp 12h | 1.22499 | 1 |
DC3000/delta hrp 24h | 0.95355 | 0.629 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0185 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.05972 | 0.558 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95376 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.19588 | 0.171 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.8242 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05237 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.61156 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.32844 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95645 | 0.277 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76745 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98801 | 1 |
Manapal/WT (break) | 0.97435 | 1 |
Manapal/WT (red) | 0.85195 | 0.188 |
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