Expression of 1-1-5.2.19.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.39522 | 0.725 |
27DAP/17DAP | 0.99556 | 1 |
39DAP/27DAP | 1.03246 | 0.857 |
41DAP/39DAP | 1.19456 | 0.92 |
42DAP/41DAP | 5.59654 | 0.016 |
43DAP/42DAP | 3.25865 | 0.475 |
47DAP/43DAP | 1.36168 | 0.463 |
52DAP/47DAP | 0.40248 | 0.033 |
57DAP/52DAP | 1.95242 | 0.638 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.4413 | 0.265 |
17DAP/reference | 1.22292 | 0.039 |
27DAP/reference | 1.5622 | 0.008 |
39DAP/reference | 1.28817 | 0.032 |
41DAP/reference | 1.40452 | 0.024 |
42DAP/reference | 1.62589 | 0.001 |
43DAP/reference | 1.36971 | 0.01 |
47DAP/reference | 1.69062 | 0.003 |
52DAP/reference | 2.0578 | 0.007 |
57DAP/reference | 1.75647 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22251 | 0.053 |
27DAP/17DAP | 0.86554 | 0.363 |
39DAP/27DAP | 1.09344 | 0.77 |
41DAP/39DAP | 0.81317 | 0.041 |
42DAP/41DAP | 0.96186 | 0.721 |
43DAP/42DAP | 0.96454 | 0.684 |
47DAP/43DAP | 1.00975 | 0.973 |
52DAP/47DAP | 1.54751 | 0.1 |
57DAP/52DAP | 1.11051 | 0.992 |
57DAP/7DAP | 1.20931 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8743 | 0.203 |
17DAP/reference | 1.24327 | 0.038 |
27DAP/reference | 1.31294 | 0.088 |
39DAP/reference | 1.28414 | 0.035 |
41DAP/reference | 1.54594 | 0.009 |
42DAP/reference | 1.30268 | 0.1 |
43DAP/reference | 1.14097 | 0.105 |
47DAP/reference | 1.23662 | 0.106 |
52DAP/reference | 1.09748 | 0.328 |
57DAP/reference | 1.11898 | 0.41 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80974 | 0.386 |
17DAP/reference | 1.31109 | 0.271 |
27DAP/reference | 1.16402 | 0.66 |
39DAP/reference | 1.50536 | 0.034 |
41DAP/reference | 1.64008 | 0.006 |
42DAP/reference | 1.64654 | 0.007 |
43DAP/reference | 0.95139 | 0.486 |
47DAP/reference | 1.42886 | 0.01 |
52DAP/reference | 1.33382 | 0.034 |
57DAP/reference | 1.16441 | 0.672 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11803 | 0.518 |
17DAP/reference | 1.00956 | 0.886 |
27DAP/reference | 0.99784 | 0.727 |
39DAP/reference | 1.07337 | 0.285 |
41DAP/reference | 1.2374 | 0.222 |
42DAP/reference | 1.29251 | 0.163 |
43DAP/reference | 1.41395 | 0.254 |
47DAP/reference | 1.26551 | 0.443 |
52DAP/reference | 1.22672 | 0.377 |
57DAP/reference | 2.07955 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90011 | 1 |
26DAP/20DAP | 0.79088 | 0.317 |
34DAP/26DAP | 0.98983 | 1 |
51DAP/34DAP | 0.96138 | 0.791 |
52DAP/51DAP | 0.86945 | 1 |
53DAP/52DAP | 0.919 | 0.712 |
55DAP/53DAP | 1.4856 | 0.576 |
57DAP/55DAP | 0.83741 | 0.356 |
62DAP/57DAP | 1.08151 | 1 |
68DAP/62DAP | 1.06605 | 0.991 |
68DAP/14DAP | 0.71199 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 6.04116 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.13159 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.04507 | |
Mature Eggplant/Ripe Tomato | 0.02348 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.26315 | 0.742 |
1-1-2/M82 | 1.53157 | 1 |
12-2/M82 | 1.05676 | 1 |
12-4/M82 | 2.02493 | 1 |
1-3/M82 | 3.31994 | 0.248 |
2-1-1/M82 | 1.37376 | 0.457 |
2-1/M82 | 1.06006 | 1 |
2-6/M82 | 1.32422 | 0.452 |
3-2/M82 | 1.50248 | 0.549 |
4-1-1/M82 | 1.58609 | 1 |
4-1/M82 | 4.32704 | 1 |
4-3-2/M82 | 1.9504 | 0.508 |
4-3/M82 | 0.97035 | 1 |
5-3/M82 | 0.76033 | 0.642 |
6-2/M82 | 1.39729 | 1 |
6-3/M82 | 1.27257 | 1 |
7-1/M82 | 1.00153 | 1 |
7-2/M82 | 1.55928 | 0.385 |
9-3-2/M82 | 2.13644 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.58557 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.24236 | 0.839 |
IL1-4/WTpooled | 0.85506 | 0.435 |
WT/WTpooled | 1.26169 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11689 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05605 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.96358 | 1 |
DC3000/delta hrp 24h | 0.84354 | 0.136 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.63811 | |
DC3000 delta B/DC3000 delta AB | 1.00391 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99113 | 1 |
Var 0h | 1.23823 | 0.782 |
Var 12h I row2-row1 | 0.89382 | 0.363 |
Var 12h NI row2-row1 | 0.95224 | 0.906 |
Var 36h I row2-row1 | 0.80565 | 1 |
Var 36h NI row2-row1 | 1.31424 | 1 |
Var 60h I row2-row1 | 0.99178 | 1 |
Var 60h NI row2-row1 | 1.05817 | 0.904 |
Time course 0hI-0hNI | 0.95687 | 0.755 |
Time course 12hI-12hNI | 0.97601 | 0.841 |
Time course 36hI-36hNI | 0.86705 | 0.078 |
Time course 60hI-60hNI | 0.50478 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.60553 | 0.799 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97478 | 0.631 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.41269 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.16806 | 1 |
Manapal/WT (red) | 0.37646 | 0.181 |
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