Expression of 1-1-5.2.19.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.395220.725
27DAP/17DAP0.995561
39DAP/27DAP1.032460.857
41DAP/39DAP1.194560.92
42DAP/41DAP5.596540.016
43DAP/42DAP3.258650.475
47DAP/43DAP1.361680.463
52DAP/47DAP0.402480.033
57DAP/52DAP1.952420.638

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.44130.265
17DAP/reference1.222920.039
27DAP/reference1.56220.008
39DAP/reference1.288170.032
41DAP/reference1.404520.024
42DAP/reference1.625890.001
43DAP/reference1.369710.01
47DAP/reference1.690620.003
52DAP/reference2.05780.007
57DAP/reference1.756470.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.222510.053
27DAP/17DAP0.865540.363
39DAP/27DAP1.093440.77
41DAP/39DAP0.813170.041
42DAP/41DAP0.961860.721
43DAP/42DAP0.964540.684
47DAP/43DAP1.009750.973
52DAP/47DAP1.547510.1
57DAP/52DAP1.110510.992
57DAP/7DAP1.209311

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.87430.203
17DAP/reference1.243270.038
27DAP/reference1.312940.088
39DAP/reference1.284140.035
41DAP/reference1.545940.009
42DAP/reference1.302680.1
43DAP/reference1.140970.105
47DAP/reference1.236620.106
52DAP/reference1.097480.328
57DAP/reference1.118980.41

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.809740.386
17DAP/reference1.311090.271
27DAP/reference1.164020.66
39DAP/reference1.505360.034
41DAP/reference1.640080.006
42DAP/reference1.646540.007
43DAP/reference0.951390.486
47DAP/reference1.428860.01
52DAP/reference1.333820.034
57DAP/reference1.164410.672

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.118030.518
17DAP/reference1.009560.886
27DAP/reference0.997840.727
39DAP/reference1.073370.285
41DAP/reference1.23740.222
42DAP/reference1.292510.163
43DAP/reference1.413950.254
47DAP/reference1.265510.443
52DAP/reference1.226720.377
57DAP/reference2.079550.013

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.900111
26DAP/20DAP0.790880.317
34DAP/26DAP0.989831
51DAP/34DAP0.961380.791
52DAP/51DAP0.869451
53DAP/52DAP0.9190.712
55DAP/53DAP1.48560.576
57DAP/55DAP0.837410.356
62DAP/57DAP1.081511
68DAP/62DAP1.066050.991
68DAP/14DAP0.711990.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker6.041160.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.131590.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.04507
Mature Eggplant/Ripe Tomato0.023480.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.263150.742
1-1-2/M821.531571
12-2/M821.056761
12-4/M822.024931
1-3/M823.319940.248
2-1-1/M821.373760.457
2-1/M821.060061
2-6/M821.324220.452
3-2/M821.502480.549
4-1-1/M821.586091
4-1/M824.327041
4-3-2/M821.95040.508
4-3/M820.970351
5-3/M820.760330.642
6-2/M821.397291
6-3/M821.272571
7-1/M821.001531
7-2/M821.559280.385
9-3-2/M822.136441

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.58557
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.242360.839
IL1-4/WTpooled0.855060.435
WT/WTpooled1.261691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.116890.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.056050.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.963581
DC3000/delta hrp 24h0.843540.136

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.63811
DC3000 delta B/DC3000 delta AB1.003911

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991131
Var 0h1.238230.782
Var 12h I row2-row10.893820.363
Var 12h NI row2-row10.952240.906
Var 36h I row2-row10.805651
Var 36h NI row2-row11.314241
Var 60h I row2-row10.991781
Var 60h NI row2-row11.058170.904
Time course 0hI-0hNI0.956870.755
Time course 12hI-12hNI0.976010.841
Time course 36hI-36hNI0.867050.078
Time course 60hI-60hNI0.504780.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.605530.799

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.974780.631

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.412690.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.168061
Manapal/WT (red)0.376460.181