Expression of 1-1-5.2.19.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.823610.232
27DAP/17DAP1.129720.845
39DAP/27DAP1.270370.38
41DAP/39DAP1.073350.67
42DAP/41DAP0.98271
43DAP/42DAP0.916530.767
47DAP/43DAP0.81050.407
52DAP/47DAP1.130940.902
57DAP/52DAP0.959680.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.246340.101
17DAP/reference1.952830.039
27DAP/reference1.212230.529
39DAP/reference1.245950.01
41DAP/reference1.51420.019
42DAP/reference1.235740.174
43DAP/reference1.3092
47DAP/reference1.176770.448
52DAP/reference0.84573
57DAP/reference0.436050.015

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.079760.728
27DAP/17DAP0.991920.919
39DAP/27DAP1.028611
41DAP/39DAP0.918650.713
42DAP/41DAP1.183160.582
43DAP/42DAP0.892280.351
47DAP/43DAP0.995120.985
52DAP/47DAP1.339940.58
57DAP/52DAP1.174590.268
57DAP/7DAP1.153351

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.614580.056
17DAP/reference0.57880.012
27DAP/reference0.628990.031
39DAP/reference0.574010.011
41DAP/reference0.791140.082
42DAP/reference0.568510.014
43DAP/reference0.47780.011
47DAP/reference0.831620.222
52DAP/reference0.488240.011
57DAP/reference0.400320.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.738740.028
17DAP/reference1.333690.294
27DAP/reference1.101130.834
39DAP/reference1.102160.686
41DAP/reference1.078880.416
42DAP/reference1.174140.176
43DAP/reference1.007550.67
47DAP/reference1.066760.218
52DAP/reference1.242580.027
57DAP/reference1.172920.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.736530.112
17DAP/reference0.910470.417
27DAP/reference0.569790.032
39DAP/reference0.767240.031
41DAP/reference0.6460.019
42DAP/reference0.627440.036
43DAP/reference0.600650.038
47DAP/reference1.073550.73
52DAP/reference0.57470.063
57DAP/reference0.797810.074

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.311440.496
26DAP/20DAP1.274220.409
34DAP/26DAP1.252491
51DAP/34DAP1.02122
52DAP/51DAP0.863491
53DAP/52DAP0.990740.99
55DAP/53DAP1.025330.917
57DAP/55DAP2.501620.818
62DAP/57DAP1.287370.8
68DAP/62DAP1.125671
68DAP/14DAP0.938541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.617250.035

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.472570.064
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.70423
Mature Eggplant/Ripe Tomato1.316010.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.34693
12-2/M82N/AN/A
12-4/M821.030261
1-3/M82N/AN/A
2-1-1/M820.87747
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.70751
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.134291
4-3/M821.024511
5-3/M821.140160.39
6-2/M82N/AN/A
6-3/M820.993691
7-1/M821.23748
7-2/M82N/AN/A
9-3-2/M821.20121

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.905050.247
IL2-6/WTpooled0.997091
IL7-5/WTpooled1.205161
IL7-3/WTpooled0.779370.294
IL12-4/WTpooled1.011511
IL1-4/WTpooled0.932090.834
WT/WTpooled1.049580.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.993421

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.011910.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.091151
DC3000/delta hrp 24h0.622130.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.00484
DC3000 delta B/DC3000 delta AB0.966710.826

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.129830.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98731
Var 0h1.17280.936
Var 12h I row2-row10.83060.467
Var 12h NI row2-row11.052851
Var 36h I row2-row11.02511
Var 36h NI row2-row10.904530.61
Var 60h I row2-row11.002961
Var 60h NI row2-row10.913640.866
Time course 0hI-0hNI0.99421
Time course 12hI-12hNI0.982080.882
Time course 36hI-36hNI1.193190.009
Time course 60hI-60hNI1.294590.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.691630.314
transgenic ySAMdc/azygous control (breaker)0.946911
transgenic ySAMdc/azygous control (red)0.923891

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.255410.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.452710.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.809090.274