Expression of 1-1-5.2.19.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82361 | 0.232 |
27DAP/17DAP | 1.12972 | 0.845 |
39DAP/27DAP | 1.27037 | 0.38 |
41DAP/39DAP | 1.07335 | 0.67 |
42DAP/41DAP | 0.9827 | 1 |
43DAP/42DAP | 0.91653 | 0.767 |
47DAP/43DAP | 0.8105 | 0.407 |
52DAP/47DAP | 1.13094 | 0.902 |
57DAP/52DAP | 0.95968 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24634 | 0.101 |
17DAP/reference | 1.95283 | 0.039 |
27DAP/reference | 1.21223 | 0.529 |
39DAP/reference | 1.24595 | 0.01 |
41DAP/reference | 1.5142 | 0.019 |
42DAP/reference | 1.23574 | 0.174 |
43DAP/reference | 1.3092 | |
47DAP/reference | 1.17677 | 0.448 |
52DAP/reference | 0.84573 | |
57DAP/reference | 0.43605 | 0.015 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07976 | 0.728 |
27DAP/17DAP | 0.99192 | 0.919 |
39DAP/27DAP | 1.02861 | 1 |
41DAP/39DAP | 0.91865 | 0.713 |
42DAP/41DAP | 1.18316 | 0.582 |
43DAP/42DAP | 0.89228 | 0.351 |
47DAP/43DAP | 0.99512 | 0.985 |
52DAP/47DAP | 1.33994 | 0.58 |
57DAP/52DAP | 1.17459 | 0.268 |
57DAP/7DAP | 1.15335 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.61458 | 0.056 |
17DAP/reference | 0.5788 | 0.012 |
27DAP/reference | 0.62899 | 0.031 |
39DAP/reference | 0.57401 | 0.011 |
41DAP/reference | 0.79114 | 0.082 |
42DAP/reference | 0.56851 | 0.014 |
43DAP/reference | 0.4778 | 0.011 |
47DAP/reference | 0.83162 | 0.222 |
52DAP/reference | 0.48824 | 0.011 |
57DAP/reference | 0.40032 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73874 | 0.028 |
17DAP/reference | 1.33369 | 0.294 |
27DAP/reference | 1.10113 | 0.834 |
39DAP/reference | 1.10216 | 0.686 |
41DAP/reference | 1.07888 | 0.416 |
42DAP/reference | 1.17414 | 0.176 |
43DAP/reference | 1.00755 | 0.67 |
47DAP/reference | 1.06676 | 0.218 |
52DAP/reference | 1.24258 | 0.027 |
57DAP/reference | 1.17292 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73653 | 0.112 |
17DAP/reference | 0.91047 | 0.417 |
27DAP/reference | 0.56979 | 0.032 |
39DAP/reference | 0.76724 | 0.031 |
41DAP/reference | 0.646 | 0.019 |
42DAP/reference | 0.62744 | 0.036 |
43DAP/reference | 0.60065 | 0.038 |
47DAP/reference | 1.07355 | 0.73 |
52DAP/reference | 0.5747 | 0.063 |
57DAP/reference | 0.79781 | 0.074 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.31144 | 0.496 |
26DAP/20DAP | 1.27422 | 0.409 |
34DAP/26DAP | 1.25249 | 1 |
51DAP/34DAP | 1.02122 | |
52DAP/51DAP | 0.86349 | 1 |
53DAP/52DAP | 0.99074 | 0.99 |
55DAP/53DAP | 1.02533 | 0.917 |
57DAP/55DAP | 2.50162 | 0.818 |
62DAP/57DAP | 1.28737 | 0.8 |
68DAP/62DAP | 1.12567 | 1 |
68DAP/14DAP | 0.93854 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.61725 | 0.035 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.47257 | 0.064 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.70423 | |
Mature Eggplant/Ripe Tomato | 1.31601 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.34693 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.03026 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.87747 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.70751 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.13429 | 1 |
4-3/M82 | 1.02451 | 1 |
5-3/M82 | 1.14016 | 0.39 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.99369 | 1 |
7-1/M82 | 1.23748 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.2012 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90505 | 0.247 |
IL2-6/WTpooled | 0.99709 | 1 |
IL7-5/WTpooled | 1.20516 | 1 |
IL7-3/WTpooled | 0.77937 | 0.294 |
IL12-4/WTpooled | 1.01151 | 1 |
IL1-4/WTpooled | 0.93209 | 0.834 |
WT/WTpooled | 1.04958 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99342 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01191 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.09115 | 1 |
DC3000/delta hrp 24h | 0.62213 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.00484 | |
DC3000 delta B/DC3000 delta AB | 0.96671 | 0.826 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.12983 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9873 | 1 |
Var 0h | 1.1728 | 0.936 |
Var 12h I row2-row1 | 0.8306 | 0.467 |
Var 12h NI row2-row1 | 1.05285 | 1 |
Var 36h I row2-row1 | 1.0251 | 1 |
Var 36h NI row2-row1 | 0.90453 | 0.61 |
Var 60h I row2-row1 | 1.00296 | 1 |
Var 60h NI row2-row1 | 0.91364 | 0.866 |
Time course 0hI-0hNI | 0.9942 | 1 |
Time course 12hI-12hNI | 0.98208 | 0.882 |
Time course 36hI-36hNI | 1.19319 | 0.009 |
Time course 60hI-60hNI | 1.29459 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.69163 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.94691 | 1 |
transgenic ySAMdc/azygous control (red) | 0.92389 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.25541 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.45271 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.80909 | 0.274 |
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