Expression of 1-1-5.2.2.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.931440.61
27DAP/17DAP0.934370.885
39DAP/27DAP1.030861
41DAP/39DAP1.37310.22
42DAP/41DAP1.01711
43DAP/42DAP0.722010.467
47DAP/43DAP1.02770.999
52DAP/47DAP0.851390.598
57DAP/52DAP0.97750.966

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.959510.402
17DAP/reference1.057710.258
27DAP/reference0.965330.406
39DAP/reference0.999381
41DAP/reference0.985290.814
42DAP/reference0.90990.038
43DAP/reference0.975390.555
47DAP/reference0.875420.008
52DAP/reference0.89580.139
57DAP/reference0.790970.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.951420.56
27DAP/17DAP1.112670.694
39DAP/27DAP1.05560.659
41DAP/39DAP0.981270.986
42DAP/41DAP1.008770.924
43DAP/42DAP1.111960.382
47DAP/43DAP1.037940.892
52DAP/47DAP0.957360.884
57DAP/52DAP0.920020.48
57DAP/7DAP1.320460.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902780.115
17DAP/reference0.972990.447
27DAP/reference1.043210.974
39DAP/reference1.01651
41DAP/reference1.209980.223
42DAP/reference1.042111
43DAP/reference1.240030.087
47DAP/reference0.921940.222
52DAP/reference0.967720.363
57DAP/reference1.003870.719

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.078020.559
17DAP/reference1.035310.69
27DAP/reference0.98420.576
39DAP/reference0.908560.076
41DAP/reference0.834770.03
42DAP/reference0.871350.108
43DAP/reference1.010181
47DAP/reference0.857630.018
52DAP/reference1.036780.789
57DAP/reference1.087560.306

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.084780.258
17DAP/reference1.057340.757
27DAP/reference1.330990.07
39DAP/reference1.064830.451
41DAP/reference1.039710.889
42DAP/reference0.880460.108
43DAP/reference1.011060.767
47DAP/reference0.848120.109
52DAP/reference0.922360.424
57DAP/reference0.536890.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.992121
26DAP/20DAP0.831770.512
34DAP/26DAP0.959730.927
51DAP/34DAP0.875770.466
52DAP/51DAP0.997191
53DAP/52DAP0.945590.803
55DAP/53DAP0.99850.925
57DAP/55DAP1.035290.826
62DAP/57DAP1.325060.393
68DAP/62DAP0.972030.81
68DAP/14DAP0.868031

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.819680.129

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.699810.188
Mature Green Tomato/Ripe Tomato0.915630.377
Immature Eggplant/Mature Eggplant0.994151
Ripe Pepper/Ripe Tomato2.013921
Mature Eggplant/Ripe Tomato1.546910.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.964320.944
1-1-2/M820.96281
12-2/M82N/AN/A
12-4/M820.862751
1-3/M82N/AN/A
2-1-1/M820.7986
2-1/M82N/AN/A
2-6/M820.929521
3-2/M820.98159
4-1-1/M820.881871
4-1/M820.974621
4-3-2/M820.955831
4-3/M821.010991
5-3/M821.077780.572
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.84870.803
7-2/M820.906850.796
9-3-2/M820.839730.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.059741
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.132831
IL12-4/WTpooled1.026791
IL1-4/WTpooled1.19608
WT/WTpooled1.051161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.046671

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961681
DC3000/delta hrp 6h0.893890.95
DC3000/delta hrp 12h1.106771
DC3000/delta hrp 24h1.249040.095

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.960670.92
DC3000 delta B/DC3000 delta AB1.059310.625

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.956951
Exp 36h1.217240.693
Exp 60h1.267870.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025871
Var 0h0.501361
Var 12h I row2-row11.058870.506
Var 12h NI row2-row10.553530.337
Var 36h I row2-row11.11080.742
Var 36h NI row2-row10.818440.329
Var 60h I row2-row11.278351
Var 60h NI row2-row10.789920.932
Time course 0hI-0hNI0.959840.781
Time course 12hI-12hNI0.995331
Time course 36hI-36hNI1.066730.166
Time course 60hI-60hNI1.593950.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.925390.286
transgenic ySAMdc/azygous control (breaker)0.987041
transgenic ySAMdc/azygous control (red)0.99471

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.997250.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.92760.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.897851
Manapal/WT (break)0.849351
Manapal/WT (red)0.996811