Expression of 1-1-5.2.2.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93144 | 0.61 |
27DAP/17DAP | 0.93437 | 0.885 |
39DAP/27DAP | 1.03086 | 1 |
41DAP/39DAP | 1.3731 | 0.22 |
42DAP/41DAP | 1.0171 | 1 |
43DAP/42DAP | 0.72201 | 0.467 |
47DAP/43DAP | 1.0277 | 0.999 |
52DAP/47DAP | 0.85139 | 0.598 |
57DAP/52DAP | 0.9775 | 0.966 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95951 | 0.402 |
17DAP/reference | 1.05771 | 0.258 |
27DAP/reference | 0.96533 | 0.406 |
39DAP/reference | 0.99938 | 1 |
41DAP/reference | 0.98529 | 0.814 |
42DAP/reference | 0.9099 | 0.038 |
43DAP/reference | 0.97539 | 0.555 |
47DAP/reference | 0.87542 | 0.008 |
52DAP/reference | 0.8958 | 0.139 |
57DAP/reference | 0.79097 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95142 | 0.56 |
27DAP/17DAP | 1.11267 | 0.694 |
39DAP/27DAP | 1.0556 | 0.659 |
41DAP/39DAP | 0.98127 | 0.986 |
42DAP/41DAP | 1.00877 | 0.924 |
43DAP/42DAP | 1.11196 | 0.382 |
47DAP/43DAP | 1.03794 | 0.892 |
52DAP/47DAP | 0.95736 | 0.884 |
57DAP/52DAP | 0.92002 | 0.48 |
57DAP/7DAP | 1.32046 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90278 | 0.115 |
17DAP/reference | 0.97299 | 0.447 |
27DAP/reference | 1.04321 | 0.974 |
39DAP/reference | 1.0165 | 1 |
41DAP/reference | 1.20998 | 0.223 |
42DAP/reference | 1.04211 | 1 |
43DAP/reference | 1.24003 | 0.087 |
47DAP/reference | 0.92194 | 0.222 |
52DAP/reference | 0.96772 | 0.363 |
57DAP/reference | 1.00387 | 0.719 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07802 | 0.559 |
17DAP/reference | 1.03531 | 0.69 |
27DAP/reference | 0.9842 | 0.576 |
39DAP/reference | 0.90856 | 0.076 |
41DAP/reference | 0.83477 | 0.03 |
42DAP/reference | 0.87135 | 0.108 |
43DAP/reference | 1.01018 | 1 |
47DAP/reference | 0.85763 | 0.018 |
52DAP/reference | 1.03678 | 0.789 |
57DAP/reference | 1.08756 | 0.306 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08478 | 0.258 |
17DAP/reference | 1.05734 | 0.757 |
27DAP/reference | 1.33099 | 0.07 |
39DAP/reference | 1.06483 | 0.451 |
41DAP/reference | 1.03971 | 0.889 |
42DAP/reference | 0.88046 | 0.108 |
43DAP/reference | 1.01106 | 0.767 |
47DAP/reference | 0.84812 | 0.109 |
52DAP/reference | 0.92236 | 0.424 |
57DAP/reference | 0.53689 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99212 | 1 |
26DAP/20DAP | 0.83177 | 0.512 |
34DAP/26DAP | 0.95973 | 0.927 |
51DAP/34DAP | 0.87577 | 0.466 |
52DAP/51DAP | 0.99719 | 1 |
53DAP/52DAP | 0.94559 | 0.803 |
55DAP/53DAP | 0.9985 | 0.925 |
57DAP/55DAP | 1.03529 | 0.826 |
62DAP/57DAP | 1.32506 | 0.393 |
68DAP/62DAP | 0.97203 | 0.81 |
68DAP/14DAP | 0.86803 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.81968 | 0.129 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.69981 | 0.188 |
Mature Green Tomato/Ripe Tomato | 0.91563 | 0.377 |
Immature Eggplant/Mature Eggplant | 0.99415 | 1 |
Ripe Pepper/Ripe Tomato | 2.01392 | 1 |
Mature Eggplant/Ripe Tomato | 1.54691 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96432 | 0.944 |
1-1-2/M82 | 0.9628 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.86275 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.7986 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.92952 | 1 |
3-2/M82 | 0.98159 | |
4-1-1/M82 | 0.88187 | 1 |
4-1/M82 | 0.97462 | 1 |
4-3-2/M82 | 0.95583 | 1 |
4-3/M82 | 1.01099 | 1 |
5-3/M82 | 1.07778 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.8487 | 0.803 |
7-2/M82 | 0.90685 | 0.796 |
9-3-2/M82 | 0.83973 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.05974 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.13283 | 1 |
IL12-4/WTpooled | 1.02679 | 1 |
IL1-4/WTpooled | 1.19608 | |
WT/WTpooled | 1.05116 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04667 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96168 | 1 |
DC3000/delta hrp 6h | 0.89389 | 0.95 |
DC3000/delta hrp 12h | 1.10677 | 1 |
DC3000/delta hrp 24h | 1.24904 | 0.095 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.96067 | 0.92 |
DC3000 delta B/DC3000 delta AB | 1.05931 | 0.625 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95695 | 1 |
Exp 36h | 1.21724 | 0.693 |
Exp 60h | 1.26787 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02587 | 1 |
Var 0h | 0.50136 | 1 |
Var 12h I row2-row1 | 1.05887 | 0.506 |
Var 12h NI row2-row1 | 0.55353 | 0.337 |
Var 36h I row2-row1 | 1.1108 | 0.742 |
Var 36h NI row2-row1 | 0.81844 | 0.329 |
Var 60h I row2-row1 | 1.27835 | 1 |
Var 60h NI row2-row1 | 0.78992 | 0.932 |
Time course 0hI-0hNI | 0.95984 | 0.781 |
Time course 12hI-12hNI | 0.99533 | 1 |
Time course 36hI-36hNI | 1.06673 | 0.166 |
Time course 60hI-60hNI | 1.59395 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92539 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 0.98704 | 1 |
transgenic ySAMdc/azygous control (red) | 0.9947 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99725 | 0.806 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.9276 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89785 | 1 |
Manapal/WT (break) | 0.84935 | 1 |
Manapal/WT (red) | 0.99681 | 1 |
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