Tomato Functional Genomics Database (TFGD)

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Expression of 1-1-5.2.2.21

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	2.31424	0.498
27DAP/17DAP	0.90992	0.746
39DAP/27DAP	0.86363	0.67
41DAP/39DAP	1.35202	0.825
42DAP/41DAP	1.20491	0.945
43DAP/42DAP	1.07441	0.931
47DAP/43DAP	0.87799	0.555
52DAP/47DAP	0.94795	0.75
57DAP/52DAP	1.47635	0.969

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.9652	0.578
17DAP/reference	0.41828	N/A
27DAP/reference	2.50797	0.66
39DAP/reference	0.64613	0.455
41DAP/reference	1.03225	1
42DAP/reference	1.13323	0.108
43DAP/reference	1.04659	0.36
47DAP/reference	1.58147	0.34
52DAP/reference	0.69221	0.202
57DAP/reference	0.85801	0.277

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.47783	N/A
27DAP/17DAP	0.63271	N/A
39DAP/27DAP	1.73705	0.209
41DAP/39DAP	0.71332	N/A
42DAP/41DAP	1.80461	0.301
43DAP/42DAP	2.26033	0.413
47DAP/43DAP	1.15938	0.901
52DAP/47DAP	3.15707	N/A
57DAP/52DAP	0.80413	N/A
57DAP/7DAP	1.44332	0.249

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91822	0.402
17DAP/reference	0.84618	0.082
27DAP/reference	0.81469	0.013
39DAP/reference	0.71087	0.013
41DAP/reference	0.9324	0.284
42DAP/reference	0.88575	0.2
43DAP/reference	0.90913	0.22
47DAP/reference	0.80707	0.383
52DAP/reference	0.97822	0.523
57DAP/reference	1.04234	0.612

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.85578	0.655
17DAP/reference	0.7782	N/A
27DAP/reference	N/A	N/A
39DAP/reference	N/A	N/A
41DAP/reference	N/A	N/A
42DAP/reference	0.52939	N/A
43DAP/reference	1.59766	0.611
47DAP/reference	N/A	N/A
52DAP/reference	1.55496	1
57DAP/reference	0.57565	N/A

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.87715	0.104
17DAP/reference	1.27455	0.326
27DAP/reference	1.04025	N/A
39DAP/reference	0.94102	0.591
41DAP/reference	1.03316	0.796
42DAP/reference	0.85826	0.287
43DAP/reference	1.12037	0.71
47DAP/reference	N/A	N/A
52DAP/reference	1.15684	0.649
57DAP/reference	0.99402	0.753

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.18173	0.966
26DAP/20DAP	1.59238	N/A
34DAP/26DAP	1.05659	1
51DAP/34DAP	N/A	N/A
52DAP/51DAP	0.55177	1
53DAP/52DAP	0.7949	0.544
55DAP/53DAP	0.79475	0.218
57DAP/55DAP	0.58501	0.107
62DAP/57DAP	N/A	N/A
68DAP/62DAP	2.29563	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.24283	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	1.3408	0.26

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.06461	1
IL2-6/WTpooled	0.71641	0.473
IL7-5/WTpooled	1.30516	0.792
IL7-3/WTpooled	1.13292	1
IL12-4/WTpooled	0.9408	1
IL1-4/WTpooled	0.91694	0.699
WT/WTpooled	0.97737	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	2.42731	0.183
Manapal/WT (red)	1.16893	0.222