Expression of 1-1-5.2.20.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92209 | 0.551 |
27DAP/17DAP | 1.4329 | 0.799 |
39DAP/27DAP | 0.97257 | 0.682 |
41DAP/39DAP | 1.1219 | 0.949 |
42DAP/41DAP | 1.08681 | 0.992 |
43DAP/42DAP | 1.13339 | 1 |
47DAP/43DAP | 0.99657 | 0.943 |
52DAP/47DAP | 1.33129 | 0.545 |
57DAP/52DAP | 1.20935 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94441 | 0.422 |
17DAP/reference | 1.02314 | 0.843 |
27DAP/reference | 0.98353 | 0.711 |
39DAP/reference | 0.92132 | 0.342 |
41DAP/reference | 1.02024 | 1 |
42DAP/reference | 0.79661 | 0.006 |
43DAP/reference | 0.94553 | 0.448 |
47DAP/reference | 0.8851 | 0.071 |
52DAP/reference | 1.00854 | 0.618 |
57DAP/reference | 1.01631 | 0.805 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16357 | 0.547 |
27DAP/17DAP | 0.96456 | 0.878 |
39DAP/27DAP | 0.93998 | 0.703 |
41DAP/39DAP | 1.12311 | 0.656 |
42DAP/41DAP | 0.98493 | 0.764 |
43DAP/42DAP | 0.93932 | 0.665 |
47DAP/43DAP | 1.11532 | 0.618 |
52DAP/47DAP | 0.85576 | 0.507 |
57DAP/52DAP | 0.9948 | 0.768 |
57DAP/7DAP | 1.12693 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97479 | 0.613 |
17DAP/reference | 0.88498 | 0.124 |
27DAP/reference | 0.79646 | 0.058 |
39DAP/reference | 0.76399 | 0.013 |
41DAP/reference | 0.88437 | 0.067 |
42DAP/reference | 0.64841 | 0.011 |
43DAP/reference | 0.87167 | 0.027 |
47DAP/reference | 0.86116 | 0.293 |
52DAP/reference | 0.93383 | 0.232 |
57DAP/reference | 0.92855 | 0.215 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02624 | 1 |
17DAP/reference | 0.8555 | 0.189 |
27DAP/reference | 1.00945 | 0.711 |
39DAP/reference | 0.87811 | 0.214 |
41DAP/reference | 0.79493 | 0.098 |
42DAP/reference | 1.00721 | 0.594 |
43DAP/reference | 1.03054 | 0.787 |
47DAP/reference | 0.94246 | 0.302 |
52DAP/reference | 0.94457 | 0.351 |
57DAP/reference | 0.89919 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07071 | 0.758 |
17DAP/reference | 0.99456 | 0.792 |
27DAP/reference | 0.96809 | 0.49 |
39DAP/reference | 0.89728 | 0.092 |
41DAP/reference | 0.89187 | 0.264 |
42DAP/reference | 0.87656 | 0.134 |
43DAP/reference | 1.02813 | 1 |
47DAP/reference | 0.76383 | 0.125 |
52DAP/reference | 0.8151 | 0.172 |
57DAP/reference | 0.84113 | 0.104 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98638 | 1 |
26DAP/20DAP | 1.17225 | 0.962 |
34DAP/26DAP | 0.89323 | 0.675 |
51DAP/34DAP | 0.98637 | 0.856 |
52DAP/51DAP | 0.86006 | 1 |
53DAP/52DAP | 0.86448 | 0.595 |
55DAP/53DAP | 1.37386 | 0.842 |
57DAP/55DAP | 1.53147 | 0.393 |
62DAP/57DAP | 1.32259 | 0.622 |
68DAP/62DAP | 1.68996 | 0.788 |
68DAP/14DAP | 1.42541 | 0.558 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.34298 | 0.496 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.91552 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 4.39728 | |
Mature Eggplant/Ripe Tomato | 0.72506 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01137 | 1 |
1-1-2/M82 | 0.80593 | 1 |
12-2/M82 | 1.06567 | 1 |
12-4/M82 | 1.15169 | 1 |
1-3/M82 | 0.71395 | 0.368 |
2-1-1/M82 | 0.94989 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.23709 | 0.452 |
3-2/M82 | 0.79588 | |
4-1-1/M82 | 0.97541 | 0.668 |
4-1/M82 | 1.0446 | |
4-3-2/M82 | 1.04768 | 1 |
4-3/M82 | 0.80791 | 0.72 |
5-3/M82 | 0.92263 | 1 |
6-2/M82 | 0.83337 | |
6-3/M82 | 0.94901 | 1 |
7-1/M82 | 0.96231 | 1 |
7-2/M82 | 2.18051 | 1 |
9-3-2/M82 | 1.09235 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83635 | 0.243 |
IL2-6/WTpooled | 0.74986 | |
IL7-5/WTpooled | 1.18091 | 1 |
IL7-3/WTpooled | 0.84297 | |
IL12-4/WTpooled | 1.25056 | 0.695 |
IL1-4/WTpooled | 1.01784 | 1 |
WT/WTpooled | 1.09996 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02504 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93251 | 1 |
DC3000/delta hrp 6h | 1.22744 | 1 |
DC3000/delta hrp 12h | 0.93032 | 1 |
DC3000/delta hrp 24h | 1.07253 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.02826 | 0.489 |
Exp 60h | 1.13456 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95706 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.0767 | 0.736 |
Var 12h NI row2-row1 | 1.24027 | 0.266 |
Var 36h I row2-row1 | 1.75154 | 0.742 |
Var 36h NI row2-row1 | 1.08239 | |
Var 60h I row2-row1 | 0.93565 | 0.952 |
Var 60h NI row2-row1 | 0.88676 | 0.63 |
Time course 0hI-0hNI | 0.99445 | 1 |
Time course 12hI-12hNI | 1.0516 | 0.9 |
Time course 36hI-36hNI | 1.1379 | 0.19 |
Time course 60hI-60hNI | 1.43687 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08991 | 0.261 |
transgenic ySAMdc/azygous control (breaker) | 0.88638 | 0.137 |
transgenic ySAMdc/azygous control (red) | 0.99243 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04888 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.61478 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.01824 | 1 |
Manapal/WT (break) | 0.94756 | 1 |
Manapal/WT (red) | 0.96419 | 0.607 |
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