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Expression of 1-1-5.2.20.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.922090.551
27DAP/17DAP1.43290.799
39DAP/27DAP0.972570.682
41DAP/39DAP1.12190.949
42DAP/41DAP1.086810.992
43DAP/42DAP1.133391
47DAP/43DAP0.996570.943
52DAP/47DAP1.331290.545
57DAP/52DAP1.209350.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.944410.422
17DAP/reference1.023140.843
27DAP/reference0.983530.711
39DAP/reference0.921320.342
41DAP/reference1.020241
42DAP/reference0.796610.006
43DAP/reference0.945530.448
47DAP/reference0.88510.071
52DAP/reference1.008540.618
57DAP/reference1.016310.805

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.163570.547
27DAP/17DAP0.964560.878
39DAP/27DAP0.939980.703
41DAP/39DAP1.123110.656
42DAP/41DAP0.984930.764
43DAP/42DAP0.939320.665
47DAP/43DAP1.115320.618
52DAP/47DAP0.855760.507
57DAP/52DAP0.99480.768
57DAP/7DAP1.126931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.974790.613
17DAP/reference0.884980.124
27DAP/reference0.796460.058
39DAP/reference0.763990.013
41DAP/reference0.884370.067
42DAP/reference0.648410.011
43DAP/reference0.871670.027
47DAP/reference0.861160.293
52DAP/reference0.933830.232
57DAP/reference0.928550.215

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.026241
17DAP/reference0.85550.189
27DAP/reference1.009450.711
39DAP/reference0.878110.214
41DAP/reference0.794930.098
42DAP/reference1.007210.594
43DAP/reference1.030540.787
47DAP/reference0.942460.302
52DAP/reference0.944570.351
57DAP/reference0.899190.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.070710.758
17DAP/reference0.994560.792
27DAP/reference0.968090.49
39DAP/reference0.897280.092
41DAP/reference0.891870.264
42DAP/reference0.876560.134
43DAP/reference1.028131
47DAP/reference0.763830.125
52DAP/reference0.81510.172
57DAP/reference0.841130.104

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.986381
26DAP/20DAP1.172250.962
34DAP/26DAP0.893230.675
51DAP/34DAP0.986370.856
52DAP/51DAP0.860061
53DAP/52DAP0.864480.595
55DAP/53DAP1.373860.842
57DAP/55DAP1.531470.393
62DAP/57DAP1.322590.622
68DAP/62DAP1.689960.788
68DAP/14DAP1.425410.558

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.342980.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.91552N/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato4.39728N/A
Mature Eggplant/Ripe Tomato0.72506N/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.011371
1-1-2/M820.805931
12-2/M821.065671
12-4/M821.151691
1-3/M820.713950.368
2-1-1/M820.949891
2-1/M82N/AN/A
2-6/M821.237090.452
3-2/M820.79588N/A
4-1-1/M820.975410.668
4-1/M821.0446N/A
4-3-2/M821.047681
4-3/M820.807910.72
5-3/M820.922631
6-2/M820.83337N/A
6-3/M820.949011
7-1/M820.962311
7-2/M822.180511
9-3-2/M821.092351

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.836350.243
IL2-6/WTpooled0.74986N/A
IL7-5/WTpooled1.180911
IL7-3/WTpooled0.84297N/A
IL12-4/WTpooled1.250560.695
IL1-4/WTpooled1.017841
WT/WTpooled1.099961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.025041

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.932511
DC3000/delta hrp 6h1.227441
DC3000/delta hrp 12h0.930321
DC3000/delta hrp 24h1.072530.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.028260.489
Exp 60h1.134561

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.957061
Var 0hN/AN/A
Var 12h I row2-row11.07670.736
Var 12h NI row2-row11.240270.266
Var 36h I row2-row11.751540.742
Var 36h NI row2-row11.08239N/A
Var 60h I row2-row10.935650.952
Var 60h NI row2-row10.886760.63
Time course 0hI-0hNI0.994451
Time course 12hI-12hNI1.05160.9
Time course 36hI-36hNI1.13790.19
Time course 60hI-60hNI1.436870.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.089910.261
transgenic ySAMdc/azygous control (breaker)0.886380.137
transgenic ySAMdc/azygous control (red)0.992431

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.048880.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.614780.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.018241
Manapal/WT (break)0.947561
Manapal/WT (red)0.964190.607