Expression of 1-1-5.2.20.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.904790.586
27DAP/17DAP1.149910.92
39DAP/27DAP0.528210.364
41DAP/39DAP1.651950.498
42DAP/41DAP0.679881
43DAP/42DAP1.206651
47DAP/43DAP0.926910.705
52DAP/47DAP1.05250.816
57DAP/52DAP1.654510.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.012620.771
17DAP/reference0.98830.819
27DAP/reference1.009470.996
39DAP/reference0.928620.228
41DAP/reference0.929040.542
42DAP/reference0.954290.163
43DAP/reference0.882280.118
47DAP/reference0.836590.008
52DAP/reference0.926320.167
57DAP/reference0.94780.308

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.180930.923
27DAP/17DAP0.871660.748
39DAP/27DAP1.005920.874
41DAP/39DAP1.953970.023
42DAP/41DAP0.857760.404
43DAP/42DAP1.307390.176
47DAP/43DAP1.193510.848
52DAP/47DAP0.902410.634
57DAP/52DAP1.660730.043
57DAP/7DAP1.331691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.079410.576
17DAP/reference1.126930.525
27DAP/reference1.123680.371
39DAP/reference1.20930.175
41DAP/reference1.173590.207
42DAP/reference1.291430.174
43DAP/reference1.113650.148
47DAP/reference1.2580.13
52DAP/reference1.188660.13
57DAP/reference1.09710.356

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.781770.06
17DAP/reference0.87330.043
27DAP/reference1.007630.765
39DAP/reference1.060521
41DAP/reference0.928020.315
42DAP/reference0.964710.433
43DAP/reference1.110790.462
47DAP/reference0.959080.319
52DAP/reference0.95950.302
57DAP/reference1.173910.188

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.053480.616
17DAP/reference1.106970.689
27DAP/reference0.959780.516
39DAP/reference1.179270.211
41DAP/reference1.139170.455
42DAP/reference1.172450.424
43DAP/reference1.233090.452
47DAP/reference0.990480.61
52DAP/reference1.088220.837
57DAP/reference0.96440.509

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.962741
26DAP/20DAP0.813211
34DAP/26DAP0.879820.893
51DAP/34DAP1.654360.967
52DAP/51DAP1.22240.888
53DAP/52DAP1.000560.998
55DAP/53DAP1.19870.771
57DAP/55DAP1.213261
62DAP/57DAP1.240750.767
68DAP/62DAP1.367410.472
68DAP/14DAP0.89049

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.161640.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.121910.683
Ripe Pepper/Ripe Tomato1.02304
Mature Eggplant/Ripe Tomato1.76955

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.683150.247
IL2-6/WTpooled1.503060.415
IL7-5/WTpooled1.247870.792
IL7-3/WTpooled1.241911
IL12-4/WTpooled1.756170.557
IL1-4/WTpooled1.392260.426
WT/WTpooled0.979551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.63160.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.0661
DC3000/delta hrp 6h0.95005
DC3000/delta hrp 12h0.692591
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.241690.196
Exp 36h1.463270.371
Exp 60h1.591390.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.70616
Var 0hN/AN/A
Var 12h I row2-row11.094710.379
Var 12h NI row2-row11.093110.649
Var 36h I row2-row10.898550.291
Var 36h NI row2-row10.91224
Var 60h I row2-row11.037851
Var 60h NI row2-row10.297461
Time course 0hI-0hNI1.126241
Time course 12hI-12hNI1.368740.56
Time course 36hI-36hNI6.85160.005
Time course 60hI-60hNI6.96150.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.945490.309
transgenic ySAMdc/azygous control (breaker)0.973891
transgenic ySAMdc/azygous control (red)1.00361

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.042170.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.467730.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.693150.172
Manapal/WT (break)1.124091
Manapal/WT (red)0.904790.728