Expression of 1-1-5.2.20.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90479 | 0.586 |
27DAP/17DAP | 1.14991 | 0.92 |
39DAP/27DAP | 0.52821 | 0.364 |
41DAP/39DAP | 1.65195 | 0.498 |
42DAP/41DAP | 0.67988 | 1 |
43DAP/42DAP | 1.20665 | 1 |
47DAP/43DAP | 0.92691 | 0.705 |
52DAP/47DAP | 1.0525 | 0.816 |
57DAP/52DAP | 1.65451 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01262 | 0.771 |
17DAP/reference | 0.9883 | 0.819 |
27DAP/reference | 1.00947 | 0.996 |
39DAP/reference | 0.92862 | 0.228 |
41DAP/reference | 0.92904 | 0.542 |
42DAP/reference | 0.95429 | 0.163 |
43DAP/reference | 0.88228 | 0.118 |
47DAP/reference | 0.83659 | 0.008 |
52DAP/reference | 0.92632 | 0.167 |
57DAP/reference | 0.9478 | 0.308 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18093 | 0.923 |
27DAP/17DAP | 0.87166 | 0.748 |
39DAP/27DAP | 1.00592 | 0.874 |
41DAP/39DAP | 1.95397 | 0.023 |
42DAP/41DAP | 0.85776 | 0.404 |
43DAP/42DAP | 1.30739 | 0.176 |
47DAP/43DAP | 1.19351 | 0.848 |
52DAP/47DAP | 0.90241 | 0.634 |
57DAP/52DAP | 1.66073 | 0.043 |
57DAP/7DAP | 1.33169 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07941 | 0.576 |
17DAP/reference | 1.12693 | 0.525 |
27DAP/reference | 1.12368 | 0.371 |
39DAP/reference | 1.2093 | 0.175 |
41DAP/reference | 1.17359 | 0.207 |
42DAP/reference | 1.29143 | 0.174 |
43DAP/reference | 1.11365 | 0.148 |
47DAP/reference | 1.258 | 0.13 |
52DAP/reference | 1.18866 | 0.13 |
57DAP/reference | 1.0971 | 0.356 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78177 | 0.06 |
17DAP/reference | 0.8733 | 0.043 |
27DAP/reference | 1.00763 | 0.765 |
39DAP/reference | 1.06052 | 1 |
41DAP/reference | 0.92802 | 0.315 |
42DAP/reference | 0.96471 | 0.433 |
43DAP/reference | 1.11079 | 0.462 |
47DAP/reference | 0.95908 | 0.319 |
52DAP/reference | 0.9595 | 0.302 |
57DAP/reference | 1.17391 | 0.188 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05348 | 0.616 |
17DAP/reference | 1.10697 | 0.689 |
27DAP/reference | 0.95978 | 0.516 |
39DAP/reference | 1.17927 | 0.211 |
41DAP/reference | 1.13917 | 0.455 |
42DAP/reference | 1.17245 | 0.424 |
43DAP/reference | 1.23309 | 0.452 |
47DAP/reference | 0.99048 | 0.61 |
52DAP/reference | 1.08822 | 0.837 |
57DAP/reference | 0.9644 | 0.509 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96274 | 1 |
26DAP/20DAP | 0.81321 | 1 |
34DAP/26DAP | 0.87982 | 0.893 |
51DAP/34DAP | 1.65436 | 0.967 |
52DAP/51DAP | 1.2224 | 0.888 |
53DAP/52DAP | 1.00056 | 0.998 |
55DAP/53DAP | 1.1987 | 0.771 |
57DAP/55DAP | 1.21326 | 1 |
62DAP/57DAP | 1.24075 | 0.767 |
68DAP/62DAP | 1.36741 | 0.472 |
68DAP/14DAP | 0.89049 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.16164 | 0.696 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.12191 | 0.683 |
Ripe Pepper/Ripe Tomato | 1.02304 | |
Mature Eggplant/Ripe Tomato | 1.76955 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.68315 | 0.247 |
IL2-6/WTpooled | 1.50306 | 0.415 |
IL7-5/WTpooled | 1.24787 | 0.792 |
IL7-3/WTpooled | 1.24191 | 1 |
IL12-4/WTpooled | 1.75617 | 0.557 |
IL1-4/WTpooled | 1.39226 | 0.426 |
WT/WTpooled | 0.97955 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.6316 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0661 | |
DC3000/delta hrp 6h | 0.95005 | |
DC3000/delta hrp 12h | 0.69259 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.24169 | 0.196 |
Exp 36h | 1.46327 | 0.371 |
Exp 60h | 1.59139 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.70616 | |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.09471 | 0.379 |
Var 12h NI row2-row1 | 1.09311 | 0.649 |
Var 36h I row2-row1 | 0.89855 | 0.291 |
Var 36h NI row2-row1 | 0.91224 | |
Var 60h I row2-row1 | 1.03785 | 1 |
Var 60h NI row2-row1 | 0.29746 | 1 |
Time course 0hI-0hNI | 1.12624 | 1 |
Time course 12hI-12hNI | 1.36874 | 0.56 |
Time course 36hI-36hNI | 6.8516 | 0.005 |
Time course 60hI-60hNI | 6.9615 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94549 | 0.309 |
transgenic ySAMdc/azygous control (breaker) | 0.97389 | 1 |
transgenic ySAMdc/azygous control (red) | 1.0036 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04217 | 0.471 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.46773 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.69315 | 0.172 |
Manapal/WT (break) | 1.12409 | 1 |
Manapal/WT (red) | 0.90479 | 0.728 |
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