Expression of 1-1-5.2.20.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97864 | 0.779 |
27DAP/17DAP | 1.09798 | 0.859 |
39DAP/27DAP | 1.13959 | 0.841 |
41DAP/39DAP | 1.09135 | 0.822 |
42DAP/41DAP | 1.20963 | 0.913 |
43DAP/42DAP | 1.0781 | 1 |
47DAP/43DAP | 1.1787 | 0.746 |
52DAP/47DAP | 0.90942 | 0.675 |
57DAP/52DAP | 1.27844 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98207 | 0.63 |
17DAP/reference | 0.94066 | 0.597 |
27DAP/reference | 1.1988 | 0.146 |
39DAP/reference | 0.93783 | 0.276 |
41DAP/reference | 1.26032 | 0.111 |
42DAP/reference | 1.10397 | 0.13 |
43DAP/reference | 0.69801 | 0.073 |
47DAP/reference | 1.17666 | 0.069 |
52DAP/reference | 1.26359 | 0.053 |
57DAP/reference | 1.86252 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29613 | 0.068 |
27DAP/17DAP | 0.91158 | 0.614 |
39DAP/27DAP | 0.97073 | 0.768 |
41DAP/39DAP | 1.08457 | 1 |
42DAP/41DAP | 1.17411 | 0.487 |
43DAP/42DAP | 0.71762 | 0.022 |
47DAP/43DAP | 1.03108 | 0.906 |
52DAP/47DAP | 0.84454 | 0.099 |
57DAP/52DAP | 1.04056 | 0.984 |
57DAP/7DAP | 0.81743 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99318 | 0.682 |
17DAP/reference | 0.94674 | 0.108 |
27DAP/reference | 0.96637 | 0.325 |
39DAP/reference | 0.84803 | 0.039 |
41DAP/reference | 0.95418 | 0.489 |
42DAP/reference | 0.80619 | 0.046 |
43DAP/reference | 0.96944 | 0.421 |
47DAP/reference | 1.13244 | 0.571 |
52DAP/reference | 1.12622 | 0.266 |
57DAP/reference | 1.07116 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92701 | 0.412 |
17DAP/reference | 1.01452 | 0.999 |
27DAP/reference | 1.058 | 1 |
39DAP/reference | 1.00242 | 0.682 |
41DAP/reference | 1.09994 | 0.562 |
42DAP/reference | 1.03487 | 1 |
43DAP/reference | 0.87027 | 0.196 |
47DAP/reference | 1.06842 | 0.4 |
52DAP/reference | 0.96691 | 0.38 |
57DAP/reference | 0.86085 | 0.116 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94634 | 0.23 |
17DAP/reference | 0.99023 | 0.751 |
27DAP/reference | 0.94551 | 0.465 |
39DAP/reference | 0.95362 | 0.199 |
41DAP/reference | 0.93369 | 0.167 |
42DAP/reference | 0.92389 | 0.287 |
43DAP/reference | 1.17577 | 0.079 |
47DAP/reference | 1.2164 | 0.077 |
52DAP/reference | 1.08744 | 0.614 |
57DAP/reference | 1.25607 | 0.086 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95677 | 1 |
26DAP/20DAP | 1.1081 | 0.608 |
34DAP/26DAP | 0.83274 | 0.356 |
51DAP/34DAP | 1.09212 | 0.759 |
52DAP/51DAP | 0.97918 | 1 |
53DAP/52DAP | 1.32553 | 0.085 |
55DAP/53DAP | 0.90551 | 0.35 |
57DAP/55DAP | 1.4151 | 0.13 |
62DAP/57DAP | 0.82498 | 0.28 |
68DAP/62DAP | 1.30646 | 0.095 |
68DAP/14DAP | 1.19807 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.76494 | 0.102 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.65176 | 0.16 |
Mature Green Tomato/Ripe Tomato | 1.23589 | 0.149 |
Immature Eggplant/Mature Eggplant | 1.42935 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.47716 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.94981 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.12076 | 1 |
1-1-2/M82 | 1.04317 | 1 |
12-2/M82 | 0.85549 | 0.955 |
12-4/M82 | 0.75655 | 0.25 |
1-3/M82 | 1.68164 | 0.248 |
2-1-1/M82 | 0.99791 | 1 |
2-1/M82 | 1.08623 | 1 |
2-6/M82 | 1.06492 | 0.505 |
3-2/M82 | 1.05952 | |
4-1-1/M82 | 0.97935 | 1 |
4-1/M82 | 0.79011 | 1 |
4-3-2/M82 | 0.90564 | 1 |
4-3/M82 | 1.15629 | 1 |
5-3/M82 | 1.04238 | 1 |
6-2/M82 | 1.16369 | 1 |
6-3/M82 | 1.07531 | 1 |
7-1/M82 | 0.99802 | 1 |
7-2/M82 | 1.12405 | 1 |
9-3-2/M82 | 1.22255 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.90969 | 0.383 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.90867 | |
IL12-4/WTpooled | 1.0012 | 1 |
IL1-4/WTpooled | 0.96885 | 0.444 |
WT/WTpooled | 1.08882 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04359 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.15756 | 1 |
DC3000/delta hrp 12h | 0.95389 | 1 |
DC3000/delta hrp 24h | 0.83624 | 0.319 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09579 | 0.073 |
DC3000 delta B/DC3000 delta AB | 1.06433 | 0.462 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06403 | 0.254 |
Exp 36h | 0.97516 | 0.943 |
Exp 60h | 1.05999 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01676 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.96096 | 0.705 |
Var 12h NI row2-row1 | 1.01823 | 1 |
Var 36h I row2-row1 | 1.21529 | 0.368 |
Var 36h NI row2-row1 | 1.1486 | 1 |
Var 60h I row2-row1 | 0.84911 | 0.292 |
Var 60h NI row2-row1 | 0.97813 | 1 |
Time course 0hI-0hNI | 0.92081 | 0.475 |
Time course 12hI-12hNI | 0.99602 | 1 |
Time course 36hI-36hNI | 1.00517 | 1 |
Time course 60hI-60hNI | 0.94882 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99211 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.84804 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.0878 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.19938 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.78297 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.20807 | 0.14 |
Manapal/WT (break) | 1.18844 | 0.183 |
Manapal/WT (red) | 1.25979 | 0.222 |
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