Expression of 1-1-5.2.3.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94926 | 0.652 |
27DAP/17DAP | 1.22393 | 0.847 |
39DAP/27DAP | 1.12674 | 0.82 |
41DAP/39DAP | 1.12617 | 0.859 |
42DAP/41DAP | 1.34103 | 0.743 |
43DAP/42DAP | 0.95699 | 0.892 |
47DAP/43DAP | 1.48508 | 0.459 |
52DAP/47DAP | 1.25481 | 0.654 |
57DAP/52DAP | 1.01248 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.84262 | 0.011 |
17DAP/reference | 1.17893 | 0.701 |
27DAP/reference | 1.26685 | 0.348 |
39DAP/reference | 1.66568 | 0.236 |
41DAP/reference | 1.80318 | 0.067 |
42DAP/reference | 2.35941 | 0.041 |
43DAP/reference | 1.47471 | |
47DAP/reference | 1.3994 | 0.001 |
52DAP/reference | 1.39477 | 0.242 |
57DAP/reference | 0.83217 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03565 | 0.785 |
27DAP/17DAP | 0.90042 | 0.227 |
39DAP/27DAP | 1.09548 | 0.575 |
41DAP/39DAP | 0.95134 | 0.804 |
42DAP/41DAP | 0.96941 | 0.752 |
43DAP/42DAP | 1.07265 | 0.025 |
47DAP/43DAP | 0.97728 | 0.911 |
52DAP/47DAP | 1.10831 | 0.593 |
57DAP/52DAP | 0.90303 | 0.321 |
57DAP/7DAP | 0.96291 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19939 | 0.399 |
17DAP/reference | 0.97992 | 0.389 |
27DAP/reference | 0.85888 | 0.012 |
39DAP/reference | 0.91289 | 0.049 |
41DAP/reference | 0.91 | 0.223 |
42DAP/reference | 0.79771 | 0.01 |
43DAP/reference | 0.85881 | 0.016 |
47DAP/reference | 1.17392 | 1 |
52DAP/reference | 0.84502 | 0.014 |
57DAP/reference | 0.83937 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32966 | 0.39 |
17DAP/reference | 1.73921 | 0.011 |
27DAP/reference | 1.34796 | 0.028 |
39DAP/reference | 2.60365 | 0.036 |
41DAP/reference | 1.43532 | 0.293 |
42DAP/reference | 1.50765 | 0.091 |
43DAP/reference | 1.1188 | 0.392 |
47DAP/reference | 1.22691 | 0.377 |
52DAP/reference | 1.37576 | 0.006 |
57DAP/reference | 1.93647 | 0.024 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98593 | 0.653 |
17DAP/reference | 1.18438 | 0.462 |
27DAP/reference | 0.89289 | 0.041 |
39DAP/reference | 0.86606 | 0.007 |
41DAP/reference | 0.93294 | 0.096 |
42DAP/reference | 0.91513 | 0.036 |
43DAP/reference | 1.21816 | 0.331 |
47DAP/reference | 1.72774 | 0.115 |
52DAP/reference | 0.87057 | 0.327 |
57DAP/reference | 2.21843 | 0.175 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.62819 | 0.016 |
26DAP/20DAP | 1.05277 | 0.953 |
34DAP/26DAP | 1.1095 | 1 |
51DAP/34DAP | 0.99061 | 0.901 |
52DAP/51DAP | 1.03625 | 0.939 |
53DAP/52DAP | 0.9496 | 0.741 |
55DAP/53DAP | 1.12109 | 0.527 |
57DAP/55DAP | 1.13006 | 0.779 |
62DAP/57DAP | 0.85 | 0.871 |
68DAP/62DAP | 0.7963 | 0.579 |
68DAP/14DAP | 0.56486 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.11394 | 0.172 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.28966 | 0.632 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.14136 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.32791 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.73783 | 0.883 |
1-1-2/M82 | 1.0929 | 1 |
12-2/M82 | 0.97148 | 0.955 |
12-4/M82 | 0.88475 | 0.358 |
1-3/M82 | 0.63878 | |
2-1-1/M82 | 0.73811 | 0.465 |
2-1/M82 | 0.96902 | 1 |
2-6/M82 | 0.85734 | 0.501 |
3-2/M82 | 1.26925 | |
4-1-1/M82 | 0.66128 | |
4-1/M82 | 0.94532 | |
4-3-2/M82 | 0.71313 | 0.445 |
4-3/M82 | 0.29934 | 0.292 |
5-3/M82 | 0.99221 | 1 |
6-2/M82 | 1.78922 | 0.235 |
6-3/M82 | 1.14053 | 1 |
7-1/M82 | 1.18858 | 1 |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.92247 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.24596 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.6562 | 0.71 |
IL1-4/WTpooled | 1.2716 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18551 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00537 | 1 |
DC3000/delta hrp 6h | 0.87078 | 0.95 |
DC3000/delta hrp 12h | 1.20315 | 1 |
DC3000/delta hrp 24h | 0.80912 | 0.061 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.83124 | 0.196 |
DC3000 delta B/DC3000 delta AB | 0.94891 | 0.657 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04827 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 0.6137 | 0.132 |
transgenic ySAMdc/azygous control (red) | 0.84401 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.15711 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80189 | 1 |
Manapal/WT (break) | 0.77726 | 0.333 |
Manapal/WT (red) | 0.72304 | 0.181 |
|
|