Expression of 1-1-5.2.3.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.949260.652
27DAP/17DAP1.223930.847
39DAP/27DAP1.126740.82
41DAP/39DAP1.126170.859
42DAP/41DAP1.341030.743
43DAP/42DAP0.956990.892
47DAP/43DAP1.485080.459
52DAP/47DAP1.254810.654
57DAP/52DAP1.012480.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.842620.011
17DAP/reference1.178930.701
27DAP/reference1.266850.348
39DAP/reference1.665680.236
41DAP/reference1.803180.067
42DAP/reference2.359410.041
43DAP/reference1.47471
47DAP/reference1.39940.001
52DAP/reference1.394770.242
57DAP/reference0.83217

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.035650.785
27DAP/17DAP0.900420.227
39DAP/27DAP1.095480.575
41DAP/39DAP0.951340.804
42DAP/41DAP0.969410.752
43DAP/42DAP1.072650.025
47DAP/43DAP0.977280.911
52DAP/47DAP1.108310.593
57DAP/52DAP0.903030.321
57DAP/7DAP0.962911

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.199390.399
17DAP/reference0.979920.389
27DAP/reference0.858880.012
39DAP/reference0.912890.049
41DAP/reference0.910.223
42DAP/reference0.797710.01
43DAP/reference0.858810.016
47DAP/reference1.173921
52DAP/reference0.845020.014
57DAP/reference0.839370.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.329660.39
17DAP/reference1.739210.011
27DAP/reference1.347960.028
39DAP/reference2.603650.036
41DAP/reference1.435320.293
42DAP/reference1.507650.091
43DAP/reference1.11880.392
47DAP/reference1.226910.377
52DAP/reference1.375760.006
57DAP/reference1.936470.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.985930.653
17DAP/reference1.184380.462
27DAP/reference0.892890.041
39DAP/reference0.866060.007
41DAP/reference0.932940.096
42DAP/reference0.915130.036
43DAP/reference1.218160.331
47DAP/reference1.727740.115
52DAP/reference0.870570.327
57DAP/reference2.218430.175

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.628190.016
26DAP/20DAP1.052770.953
34DAP/26DAP1.10951
51DAP/34DAP0.990610.901
52DAP/51DAP1.036250.939
53DAP/52DAP0.94960.741
55DAP/53DAP1.121090.527
57DAP/55DAP1.130060.779
62DAP/57DAP0.850.871
68DAP/62DAP0.79630.579
68DAP/14DAP0.564860.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.113940.172

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.289660.632
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.141360.224
Mature Eggplant/Ripe Tomato0.32791

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.737830.883
1-1-2/M821.09291
12-2/M820.971480.955
12-4/M820.884750.358
1-3/M820.63878
2-1-1/M820.738110.465
2-1/M820.969021
2-6/M820.857340.501
3-2/M821.26925
4-1-1/M820.66128
4-1/M820.94532
4-3-2/M820.713130.445
4-3/M820.299340.292
5-3/M820.992211
6-2/M821.789220.235
6-3/M821.140531
7-1/M821.188581
7-2/M82N/AN/A
9-3-2/M820.922470.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.24596
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.65620.71
IL1-4/WTpooled1.27161
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.185510.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.005371
DC3000/delta hrp 6h0.870780.95
DC3000/delta hrp 12h1.203151
DC3000/delta hrp 24h0.809120.061

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.831240.196
DC3000 delta B/DC3000 delta AB0.948910.657

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.048270.921
transgenic ySAMdc/azygous control (breaker)0.61370.132
transgenic ySAMdc/azygous control (red)0.844011

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.157110.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.801891
Manapal/WT (break)0.777260.333
Manapal/WT (red)0.723040.181