Expression of 1-1-5.2.4.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83007 | 0.364 |
27DAP/17DAP | 1.08957 | 0.895 |
39DAP/27DAP | 0.70657 | 0.286 |
41DAP/39DAP | 1.15006 | 0.535 |
42DAP/41DAP | 0.93257 | 1 |
43DAP/42DAP | 0.90889 | 0.815 |
47DAP/43DAP | 1.14303 | 0.856 |
52DAP/47DAP | 1.08616 | 0.772 |
57DAP/52DAP | 0.90041 | 0.882 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09487 | 0.179 |
17DAP/reference | 1.05303 | 0.631 |
27DAP/reference | 1.06922 | 0.435 |
39DAP/reference | 1.05479 | 0.504 |
41DAP/reference | 1.03509 | 0.587 |
42DAP/reference | 0.95715 | 0.139 |
43DAP/reference | 0.91271 | 0.143 |
47DAP/reference | 1.07578 | 0.207 |
52DAP/reference | 1.00266 | 0.668 |
57DAP/reference | 0.99925 | 0.767 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77063 | 0.033 |
27DAP/17DAP | 1.08436 | 0.73 |
39DAP/27DAP | 0.67064 | 0.073 |
41DAP/39DAP | 0.95401 | 0.861 |
42DAP/41DAP | 0.88587 | 0.377 |
43DAP/42DAP | 0.92332 | 0.415 |
47DAP/43DAP | 1.07761 | 0.805 |
52DAP/47DAP | 1.12823 | 0.81 |
57DAP/52DAP | 1.04628 | 0.925 |
57DAP/7DAP | 0.83846 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8821 | 0.108 |
17DAP/reference | 1.07475 | 0.297 |
27DAP/reference | 1.00664 | 1 |
39DAP/reference | 0.94879 | 0.264 |
41DAP/reference | 0.88474 | 0.052 |
42DAP/reference | 0.78071 | 0.016 |
43DAP/reference | 0.63152 | 0.011 |
47DAP/reference | 0.81638 | 0.079 |
52DAP/reference | 0.62651 | 0.011 |
57DAP/reference | 0.64764 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15107 | 0.129 |
17DAP/reference | 1.14299 | 0.127 |
27DAP/reference | 1.0098 | 0.765 |
39DAP/reference | 0.98581 | 0.554 |
41DAP/reference | 1.04092 | 0.735 |
42DAP/reference | 1.01151 | 0.723 |
43DAP/reference | 1.34317 | 0.039 |
47DAP/reference | 1.15993 | 0.101 |
52DAP/reference | 1.07027 | 0.417 |
57DAP/reference | 1.09362 | 0.827 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89332 | 0.112 |
17DAP/reference | 1.01754 | 0.898 |
27DAP/reference | 0.75837 | 0.026 |
39DAP/reference | 0.71861 | 0.017 |
41DAP/reference | 0.87741 | 0.119 |
42DAP/reference | 0.9304 | 0.361 |
43DAP/reference | 0.84388 | 0.084 |
47DAP/reference | 1.07028 | 0.388 |
52DAP/reference | 0.79775 | 0.111 |
57DAP/reference | 0.76901 | 0.033 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09753 | 0.966 |
26DAP/20DAP | 1.00997 | 1 |
34DAP/26DAP | 1.64394 | 0.819 |
51DAP/34DAP | 1.14286 | 0.535 |
52DAP/51DAP | 1.25548 | 0.783 |
53DAP/52DAP | 0.70636 | 0.049 |
55DAP/53DAP | 1.34126 | 0.703 |
57DAP/55DAP | 0.82517 | 0.464 |
62DAP/57DAP | 1.38198 | 0.767 |
68DAP/62DAP | 1.08396 | 0.962 |
68DAP/14DAP | 0.84869 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94235 | 0.52 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.54943 | |
Immature Eggplant/Mature Eggplant | 0.2397 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05312 | 1 |
1-1-2/M82 | 0.81762 | 0.804 |
12-2/M82 | 1.54101 | 0.61 |
12-4/M82 | 1.24705 | 0.563 |
1-3/M82 | 1.08718 | |
2-1-1/M82 | 1.03852 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.11228 | 0.695 |
3-2/M82 | 0.65541 | |
4-1-1/M82 | 1.10944 | 1 |
4-1/M82 | 1.80167 | |
4-3-2/M82 | 0.97378 | |
4-3/M82 | 0.81395 | 1 |
5-3/M82 | 0.9643 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.99643 | 1 |
7-1/M82 | 0.98668 | 1 |
7-2/M82 | 1.02437 | |
9-3-2/M82 | 0.88846 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.20768 | 0.46 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.8649 | 1 |
IL12-4/WTpooled | 1.17285 | 0.695 |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 0.96972 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11939 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03835 | 0.921 |
DC3000/delta hrp 6h | 0.87621 | 0.95 |
DC3000/delta hrp 12h | 0.85853 | 1 |
DC3000/delta hrp 24h | 1.02443 | 0.821 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.5403 | 0.264 |
Exp 60h | 0.4207 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05999 | 1 |
Var 0h | 1.60635 | 0.936 |
Var 12h I row2-row1 | 1.05926 | 0.272 |
Var 12h NI row2-row1 | 0.99062 | 1 |
Var 36h I row2-row1 | 0.79904 | 1 |
Var 36h NI row2-row1 | 0.90462 | 0.61 |
Var 60h I row2-row1 | 1.22807 | 1 |
Var 60h NI row2-row1 | 0.9471 | 0.932 |
Time course 0hI-0hNI | 1.01968 | 0.867 |
Time course 12hI-12hNI | 1.03622 | 0.756 |
Time course 36hI-36hNI | 1.00204 | 0.89 |
Time course 60hI-60hNI | 1.2503 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08025 | 0.347 |
transgenic ySAMdc/azygous control (breaker) | 0.92942 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.03479 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03721 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.63377 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72392 | 1 |
Manapal/WT (break) | 0.91099 | 1 |
Manapal/WT (red) | 1.17534 | 1 |
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