Expression of 1-1-5.2.4.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.830070.364
27DAP/17DAP1.089570.895
39DAP/27DAP0.706570.286
41DAP/39DAP1.150060.535
42DAP/41DAP0.932571
43DAP/42DAP0.908890.815
47DAP/43DAP1.143030.856
52DAP/47DAP1.086160.772
57DAP/52DAP0.900410.882

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.094870.179
17DAP/reference1.053030.631
27DAP/reference1.069220.435
39DAP/reference1.054790.504
41DAP/reference1.035090.587
42DAP/reference0.957150.139
43DAP/reference0.912710.143
47DAP/reference1.075780.207
52DAP/reference1.002660.668
57DAP/reference0.999250.767

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.770630.033
27DAP/17DAP1.084360.73
39DAP/27DAP0.670640.073
41DAP/39DAP0.954010.861
42DAP/41DAP0.885870.377
43DAP/42DAP0.923320.415
47DAP/43DAP1.077610.805
52DAP/47DAP1.128230.81
57DAP/52DAP1.046280.925
57DAP/7DAP0.838461

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.88210.108
17DAP/reference1.074750.297
27DAP/reference1.006641
39DAP/reference0.948790.264
41DAP/reference0.884740.052
42DAP/reference0.780710.016
43DAP/reference0.631520.011
47DAP/reference0.816380.079
52DAP/reference0.626510.011
57DAP/reference0.647640.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.151070.129
17DAP/reference1.142990.127
27DAP/reference1.00980.765
39DAP/reference0.985810.554
41DAP/reference1.040920.735
42DAP/reference1.011510.723
43DAP/reference1.343170.039
47DAP/reference1.159930.101
52DAP/reference1.070270.417
57DAP/reference1.093620.827

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893320.112
17DAP/reference1.017540.898
27DAP/reference0.758370.026
39DAP/reference0.718610.017
41DAP/reference0.877410.119
42DAP/reference0.93040.361
43DAP/reference0.843880.084
47DAP/reference1.070280.388
52DAP/reference0.797750.111
57DAP/reference0.769010.033

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.097530.966
26DAP/20DAP1.009971
34DAP/26DAP1.643940.819
51DAP/34DAP1.142860.535
52DAP/51DAP1.255480.783
53DAP/52DAP0.706360.049
55DAP/53DAP1.341260.703
57DAP/55DAP0.825170.464
62DAP/57DAP1.381980.767
68DAP/62DAP1.083960.962
68DAP/14DAP0.848691

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.942350.52

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.54943
Immature Eggplant/Mature Eggplant0.2397
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.053121
1-1-2/M820.817620.804
12-2/M821.541010.61
12-4/M821.247050.563
1-3/M821.08718
2-1-1/M821.03852
2-1/M82N/AN/A
2-6/M821.112280.695
3-2/M820.65541
4-1-1/M821.109441
4-1/M821.80167
4-3-2/M820.97378
4-3/M820.813951
5-3/M820.96431
6-2/M82N/AN/A
6-3/M820.996431
7-1/M820.986681
7-2/M821.02437
9-3-2/M820.88846

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.207680.46
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.86491
IL12-4/WTpooled1.172850.695
IL1-4/WTpooledN/AN/A
WT/WTpooled0.969721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.119391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.038350.921
DC3000/delta hrp 6h0.876210.95
DC3000/delta hrp 12h0.858531
DC3000/delta hrp 24h1.024430.821

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.54030.264
Exp 60h0.42070.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.059991
Var 0h1.606350.936
Var 12h I row2-row11.059260.272
Var 12h NI row2-row10.990621
Var 36h I row2-row10.799041
Var 36h NI row2-row10.904620.61
Var 60h I row2-row11.228071
Var 60h NI row2-row10.94710.932
Time course 0hI-0hNI1.019680.867
Time course 12hI-12hNI1.036220.756
Time course 36hI-36hNI1.002040.89
Time course 60hI-60hNI1.25030.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.080250.347
transgenic ySAMdc/azygous control (breaker)0.929420.49
transgenic ySAMdc/azygous control (red)1.034790.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.037210.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.633770.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.723921
Manapal/WT (break)0.910991
Manapal/WT (red)1.175341