Expression of 1-1-5.2.4.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11478 | 0.863 |
27DAP/17DAP | 0.98651 | 0.947 |
39DAP/27DAP | 0.96115 | 0.67 |
41DAP/39DAP | 0.79727 | 0.204 |
42DAP/41DAP | 1.06368 | 1 |
43DAP/42DAP | 1.2188 | 0.661 |
47DAP/43DAP | 0.99392 | 0.884 |
52DAP/47DAP | 0.90756 | 0.662 |
57DAP/52DAP | 1.21689 | 0.837 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08338 | 0.638 |
17DAP/reference | 0.91418 | 0.448 |
27DAP/reference | 0.99753 | 0.885 |
39DAP/reference | 0.9742 | 0.828 |
41DAP/reference | 0.69594 | 0.031 |
42DAP/reference | 1.27978 | 0.338 |
43DAP/reference | 1.03214 | 1 |
47DAP/reference | 1.4303 | 0.001 |
52DAP/reference | 1.22388 | 0.141 |
57DAP/reference | 0.75441 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.32574 | 0.094 |
27DAP/17DAP | 1.0909 | 0.685 |
39DAP/27DAP | 0.91827 | 0.444 |
41DAP/39DAP | 1.08119 | 0.781 |
42DAP/41DAP | 1.12084 | 0.354 |
43DAP/42DAP | 0.91996 | 0.269 |
47DAP/43DAP | 0.91509 | 0.254 |
52DAP/47DAP | 1.07637 | 0.742 |
57DAP/52DAP | 1.06558 | 0.718 |
57DAP/7DAP | 1.00013 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96882 | 0.445 |
17DAP/reference | 0.89983 | 0.049 |
27DAP/reference | 0.85375 | 0.013 |
39DAP/reference | 0.88142 | 0.011 |
41DAP/reference | 0.93918 | 0.213 |
42DAP/reference | 0.86853 | 0.017 |
43DAP/reference | 0.84863 | 0.014 |
47DAP/reference | 1.13523 | 0.43 |
52DAP/reference | 0.79101 | 0.012 |
57DAP/reference | 0.8842 | 0.097 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47562 | 0.43 |
17DAP/reference | 1.25937 | 0.113 |
27DAP/reference | 1.361 | 0.03 |
39DAP/reference | 1.30425 | 0.068 |
41DAP/reference | 1.13189 | 0.406 |
42DAP/reference | 1.31527 | 0.03 |
43DAP/reference | 1.09598 | 0.673 |
47DAP/reference | 1.31077 | 0.029 |
52DAP/reference | 0.84832 | 0.22 |
57DAP/reference | 1.04296 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97884 | 0.526 |
17DAP/reference | 1.07134 | 0.405 |
27DAP/reference | 0.97653 | 0.539 |
39DAP/reference | 0.9497 | 0.271 |
41DAP/reference | 0.91963 | 0.096 |
42DAP/reference | 0.91912 | 0.361 |
43DAP/reference | 1.12934 | 0.565 |
47DAP/reference | 1.51986 | 0.006 |
52DAP/reference | 1.02159 | 0.747 |
57DAP/reference | 1.40001 | 0.043 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9591 | 1 |
26DAP/20DAP | 1.59574 | 0.14 |
34DAP/26DAP | 0.87491 | 0.627 |
51DAP/34DAP | 1.6103 | 0.045 |
52DAP/51DAP | 0.8588 | 1 |
53DAP/52DAP | 1.1426 | 0.738 |
55DAP/53DAP | 0.77373 | 0.115 |
57DAP/55DAP | 1.17628 | 0.51 |
62DAP/57DAP | 1.19978 | 0.723 |
68DAP/62DAP | 1.46986 | 0.11 |
68DAP/14DAP | 2.43057 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89797 | 0.304 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.70981 | 0.19 |
Mature Green Tomato/Ripe Tomato | 1.34607 | 0.106 |
Immature Eggplant/Mature Eggplant | 0.99308 | 1 |
Ripe Pepper/Ripe Tomato | 2.19026 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.41306 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.19765 | 0.574 |
1-1-2/M82 | 1.29948 | 1 |
12-2/M82 | 0.68708 | 0.955 |
12-4/M82 | 0.94467 | 1 |
1-3/M82 | 1.84419 | 0.248 |
2-1-1/M82 | 1.12766 | |
2-1/M82 | 0.81555 | |
2-6/M82 | 1.09421 | 0.695 |
3-2/M82 | 1.42295 | |
4-1-1/M82 | 1.27165 | 1 |
4-1/M82 | 1.58332 | 1 |
4-3-2/M82 | 1.51993 | |
4-3/M82 | 1.21678 | 0.268 |
5-3/M82 | 1.15929 | 1 |
6-2/M82 | 1.75672 | 1 |
6-3/M82 | 1.00394 | 1 |
7-1/M82 | 1.28255 | |
7-2/M82 | 1.50439 | 0.385 |
9-3-2/M82 | 1.53847 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.99196 | 1 |
IL7-5/WTpooled | 0.45582 | |
IL7-3/WTpooled | 1.03338 | 1 |
IL12-4/WTpooled | 1.00385 | 1 |
IL1-4/WTpooled | 1.23426 | 1 |
WT/WTpooled | 1.0365 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87543 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94263 | 1 |
DC3000/delta hrp 6h | 0.83974 | 0.95 |
DC3000/delta hrp 12h | 0.92159 | 1 |
DC3000/delta hrp 24h | 0.95373 | 0.629 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.99794 | 1 |
DC3000 delta B/DC3000 delta AB | 1.16335 | 0.304 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91641 | 1 |
Exp 36h | 0.95788 | 0.879 |
Exp 60h | 1.02181 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.18494 | 1 |
Var 0h | 0.12584 | |
Var 12h I row2-row1 | 0.98576 | |
Var 12h NI row2-row1 | 0.89107 | |
Var 36h I row2-row1 | 1.00159 | |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.04899 | 0.701 |
Time course 0hI-0hNI | 0.9384 | 0.812 |
Time course 12hI-12hNI | 0.84317 | 0.309 |
Time course 36hI-36hNI | 0.74535 | 0.06 |
Time course 60hI-60hNI | 0.48469 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07268 | 0.347 |
transgenic ySAMdc/azygous control (breaker) | 1.42169 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.06451 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.90636 | 0.054 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01417 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.03786 | 1 |
Manapal/WT (break) | 1.01264 | 1 |
Manapal/WT (red) | 1.63426 | 0.164 |
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