Expression of 1-1-5.2.4.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.114780.863
27DAP/17DAP0.986510.947
39DAP/27DAP0.961150.67
41DAP/39DAP0.797270.204
42DAP/41DAP1.063681
43DAP/42DAP1.21880.661
47DAP/43DAP0.993920.884
52DAP/47DAP0.907560.662
57DAP/52DAP1.216890.837

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.083380.638
17DAP/reference0.914180.448
27DAP/reference0.997530.885
39DAP/reference0.97420.828
41DAP/reference0.695940.031
42DAP/reference1.279780.338
43DAP/reference1.032141
47DAP/reference1.43030.001
52DAP/reference1.223880.141
57DAP/reference0.75441

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.325740.094
27DAP/17DAP1.09090.685
39DAP/27DAP0.918270.444
41DAP/39DAP1.081190.781
42DAP/41DAP1.120840.354
43DAP/42DAP0.919960.269
47DAP/43DAP0.915090.254
52DAP/47DAP1.076370.742
57DAP/52DAP1.065580.718
57DAP/7DAP1.000131

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968820.445
17DAP/reference0.899830.049
27DAP/reference0.853750.013
39DAP/reference0.881420.011
41DAP/reference0.939180.213
42DAP/reference0.868530.017
43DAP/reference0.848630.014
47DAP/reference1.135230.43
52DAP/reference0.791010.012
57DAP/reference0.88420.097

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.475620.43
17DAP/reference1.259370.113
27DAP/reference1.3610.03
39DAP/reference1.304250.068
41DAP/reference1.131890.406
42DAP/reference1.315270.03
43DAP/reference1.095980.673
47DAP/reference1.310770.029
52DAP/reference0.848320.22
57DAP/reference1.042961

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.978840.526
17DAP/reference1.071340.405
27DAP/reference0.976530.539
39DAP/reference0.94970.271
41DAP/reference0.919630.096
42DAP/reference0.919120.361
43DAP/reference1.129340.565
47DAP/reference1.519860.006
52DAP/reference1.021590.747
57DAP/reference1.400010.043

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.95911
26DAP/20DAP1.595740.14
34DAP/26DAP0.874910.627
51DAP/34DAP1.61030.045
52DAP/51DAP0.85881
53DAP/52DAP1.14260.738
55DAP/53DAP0.773730.115
57DAP/55DAP1.176280.51
62DAP/57DAP1.199780.723
68DAP/62DAP1.469860.11
68DAP/14DAP2.430570.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.897970.304

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.709810.19
Mature Green Tomato/Ripe Tomato1.346070.106
Immature Eggplant/Mature Eggplant0.993081
Ripe Pepper/Ripe Tomato2.190260.256
Mature Eggplant/Ripe Tomato1.413060.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.197650.574
1-1-2/M821.299481
12-2/M820.687080.955
12-4/M820.944671
1-3/M821.844190.248
2-1-1/M821.12766
2-1/M820.81555
2-6/M821.094210.695
3-2/M821.42295
4-1-1/M821.271651
4-1/M821.583321
4-3-2/M821.51993
4-3/M821.216780.268
5-3/M821.159291
6-2/M821.756721
6-3/M821.003941
7-1/M821.28255
7-2/M821.504390.385
9-3-2/M821.53847

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.991961
IL7-5/WTpooled0.45582
IL7-3/WTpooled1.033381
IL12-4/WTpooled1.003851
IL1-4/WTpooled1.234261
WT/WTpooled1.03651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.875430.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.942631
DC3000/delta hrp 6h0.839740.95
DC3000/delta hrp 12h0.921591
DC3000/delta hrp 24h0.953730.629

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.997941
DC3000 delta B/DC3000 delta AB1.163350.304

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.916411
Exp 36h0.957880.879
Exp 60h1.021811

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.184941
Var 0h0.12584
Var 12h I row2-row10.98576
Var 12h NI row2-row10.89107
Var 36h I row2-row11.00159
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.048990.701
Time course 0hI-0hNI0.93840.812
Time course 12hI-12hNI0.843170.309
Time course 36hI-36hNI0.745350.06
Time course 60hI-60hNI0.484690.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.072680.347
transgenic ySAMdc/azygous control (breaker)1.421690.172
transgenic ySAMdc/azygous control (red)1.064510.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.906360.054

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.014171

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.037861
Manapal/WT (break)1.012641
Manapal/WT (red)1.634260.164