Expression of 1-1-5.2.5.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.854630.249
27DAP/17DAP0.875850.72
39DAP/27DAP1.21870.501
41DAP/39DAP1.638850.288
42DAP/41DAP0.930041
43DAP/42DAP0.943370.877
47DAP/43DAP0.88160.58
52DAP/47DAP1.142040.787
57DAP/52DAP1.053930.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.979490.526
17DAP/reference0.997920.957
27DAP/reference0.943820.359
39DAP/reference0.937640.155
41DAP/reference0.950240.341
42DAP/reference0.95530.12
43DAP/reference0.968860.538
47DAP/reference0.958370.116
52DAP/reference0.881290.055
57DAP/reference0.812930.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.925690.228
27DAP/17DAP1.01260.957
39DAP/27DAP1.002490.874
41DAP/39DAP0.8270.022
42DAP/41DAP0.987450.83
43DAP/42DAP1.055330.297
47DAP/43DAP0.990390.954
52DAP/47DAP1.002581
57DAP/52DAP0.970770.564
57DAP/7DAP0.913421

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.958070.224
17DAP/reference0.890810.015
27DAP/reference0.876460.01
39DAP/reference0.921150.049
41DAP/reference0.826690.02
42DAP/reference0.901590.016
43DAP/reference0.911330.051
47DAP/reference1.348610.121
52DAP/reference0.870230.038
57DAP/reference0.841330.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.115370.234
17DAP/reference0.968540.422
27DAP/reference1.521490.16
39DAP/reference0.965640.33
41DAP/reference0.896410.045
42DAP/reference1.011080.723
43DAP/reference0.949770.361
47DAP/reference0.927270.149
52DAP/reference0.933860.029
57DAP/reference1.144290.033

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.947710.135
17DAP/reference0.960570.444
27DAP/reference0.934910.025
39DAP/reference0.962550.029
41DAP/reference0.892960.132
42DAP/reference0.859390.036
43DAP/reference0.94210.15
47DAP/reference0.863510.057
52DAP/reference0.828710.066
57DAP/reference0.575070.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.966861
26DAP/20DAP1.027441
34DAP/26DAP0.927270.619
51DAP/34DAP1.392770.04
52DAP/51DAP0.827720.079
53DAP/52DAP1.067690.797
55DAP/53DAP0.914290.478
57DAP/55DAP0.903280.601
62DAP/57DAP0.994521
68DAP/62DAP1.061890.899
68DAP/14DAP1.175850.119

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.101880.369

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.514730.094
Mature Green Tomato/Ripe Tomato1.085720.898
Immature Eggplant/Mature Eggplant1.373190.058
Ripe Pepper/Ripe Tomato2.693710.244
Mature Eggplant/Ripe Tomato1.06371

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.014731
1-1-2/M821.030441
12-2/M821.037991
12-4/M820.912741
1-3/M820.929080.501
2-1-1/M821.02328
2-1/M821.094671
2-6/M821.154620.695
3-2/M820.898050.752
4-1-1/M820.935811
4-1/M820.963171
4-3-2/M821.061741
4-3/M821.168181
5-3/M821.152771
6-2/M821.062891
6-3/M820.937370.559
7-1/M820.62809
7-2/M820.84584
9-3-2/M820.8880.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.248760.365
IL2-6/WTpooled0.930021
IL7-5/WTpooled0.601530.559
IL7-3/WTpooled1.146931
IL12-4/WTpooled0.991481
IL1-4/WTpooled0.861580.699
WT/WTpooled1.085930.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.054281

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.921470.849
DC3000/delta hrp 6h1.035631
DC3000/delta hrp 12h1.009641
DC3000/delta hrp 24h1.284780.095

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.388470.043
DC3000 delta B/DC3000 delta AB1.26420.115

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.960661
Exp 36h1.354821
Exp 60h1.030891

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98571
Var 0h0.788851
Var 12h I row2-row11.031470.654
Var 12h NI row2-row10.980410.627
Var 36h I row2-row10.956771
Var 36h NI row2-row10.990250.852
Var 60h I row2-row10.970720.832
Var 60h NI row2-row10.972831
Time course 0hI-0hNI0.992171
Time course 12hI-12hNI1.000171
Time course 36hI-36hNI0.979070.559
Time course 60hI-60hNI1.342020.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.833970.314
transgenic ySAMdc/azygous control (breaker)1.23870.248
transgenic ySAMdc/azygous control (red)1.254530.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.009520.448

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.895050.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.844071
Manapal/WT (break)0.925341
Manapal/WT (red)0.612840.181