Expression of 1-1-5.2.5.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85463 | 0.249 |
27DAP/17DAP | 0.87585 | 0.72 |
39DAP/27DAP | 1.2187 | 0.501 |
41DAP/39DAP | 1.63885 | 0.288 |
42DAP/41DAP | 0.93004 | 1 |
43DAP/42DAP | 0.94337 | 0.877 |
47DAP/43DAP | 0.8816 | 0.58 |
52DAP/47DAP | 1.14204 | 0.787 |
57DAP/52DAP | 1.05393 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97949 | 0.526 |
17DAP/reference | 0.99792 | 0.957 |
27DAP/reference | 0.94382 | 0.359 |
39DAP/reference | 0.93764 | 0.155 |
41DAP/reference | 0.95024 | 0.341 |
42DAP/reference | 0.9553 | 0.12 |
43DAP/reference | 0.96886 | 0.538 |
47DAP/reference | 0.95837 | 0.116 |
52DAP/reference | 0.88129 | 0.055 |
57DAP/reference | 0.81293 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92569 | 0.228 |
27DAP/17DAP | 1.0126 | 0.957 |
39DAP/27DAP | 1.00249 | 0.874 |
41DAP/39DAP | 0.827 | 0.022 |
42DAP/41DAP | 0.98745 | 0.83 |
43DAP/42DAP | 1.05533 | 0.297 |
47DAP/43DAP | 0.99039 | 0.954 |
52DAP/47DAP | 1.00258 | 1 |
57DAP/52DAP | 0.97077 | 0.564 |
57DAP/7DAP | 0.91342 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95807 | 0.224 |
17DAP/reference | 0.89081 | 0.015 |
27DAP/reference | 0.87646 | 0.01 |
39DAP/reference | 0.92115 | 0.049 |
41DAP/reference | 0.82669 | 0.02 |
42DAP/reference | 0.90159 | 0.016 |
43DAP/reference | 0.91133 | 0.051 |
47DAP/reference | 1.34861 | 0.121 |
52DAP/reference | 0.87023 | 0.038 |
57DAP/reference | 0.84133 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11537 | 0.234 |
17DAP/reference | 0.96854 | 0.422 |
27DAP/reference | 1.52149 | 0.16 |
39DAP/reference | 0.96564 | 0.33 |
41DAP/reference | 0.89641 | 0.045 |
42DAP/reference | 1.01108 | 0.723 |
43DAP/reference | 0.94977 | 0.361 |
47DAP/reference | 0.92727 | 0.149 |
52DAP/reference | 0.93386 | 0.029 |
57DAP/reference | 1.14429 | 0.033 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94771 | 0.135 |
17DAP/reference | 0.96057 | 0.444 |
27DAP/reference | 0.93491 | 0.025 |
39DAP/reference | 0.96255 | 0.029 |
41DAP/reference | 0.89296 | 0.132 |
42DAP/reference | 0.85939 | 0.036 |
43DAP/reference | 0.9421 | 0.15 |
47DAP/reference | 0.86351 | 0.057 |
52DAP/reference | 0.82871 | 0.066 |
57DAP/reference | 0.57507 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96686 | 1 |
26DAP/20DAP | 1.02744 | 1 |
34DAP/26DAP | 0.92727 | 0.619 |
51DAP/34DAP | 1.39277 | 0.04 |
52DAP/51DAP | 0.82772 | 0.079 |
53DAP/52DAP | 1.06769 | 0.797 |
55DAP/53DAP | 0.91429 | 0.478 |
57DAP/55DAP | 0.90328 | 0.601 |
62DAP/57DAP | 0.99452 | 1 |
68DAP/62DAP | 1.06189 | 0.899 |
68DAP/14DAP | 1.17585 | 0.119 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.10188 | 0.369 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.51473 | 0.094 |
Mature Green Tomato/Ripe Tomato | 1.08572 | 0.898 |
Immature Eggplant/Mature Eggplant | 1.37319 | 0.058 |
Ripe Pepper/Ripe Tomato | 2.69371 | 0.244 |
Mature Eggplant/Ripe Tomato | 1.0637 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01473 | 1 |
1-1-2/M82 | 1.03044 | 1 |
12-2/M82 | 1.03799 | 1 |
12-4/M82 | 0.91274 | 1 |
1-3/M82 | 0.92908 | 0.501 |
2-1-1/M82 | 1.02328 | |
2-1/M82 | 1.09467 | 1 |
2-6/M82 | 1.15462 | 0.695 |
3-2/M82 | 0.89805 | 0.752 |
4-1-1/M82 | 0.93581 | 1 |
4-1/M82 | 0.96317 | 1 |
4-3-2/M82 | 1.06174 | 1 |
4-3/M82 | 1.16818 | 1 |
5-3/M82 | 1.15277 | 1 |
6-2/M82 | 1.06289 | 1 |
6-3/M82 | 0.93737 | 0.559 |
7-1/M82 | 0.62809 | |
7-2/M82 | 0.84584 | |
9-3-2/M82 | 0.888 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.24876 | 0.365 |
IL2-6/WTpooled | 0.93002 | 1 |
IL7-5/WTpooled | 0.60153 | 0.559 |
IL7-3/WTpooled | 1.14693 | 1 |
IL12-4/WTpooled | 0.99148 | 1 |
IL1-4/WTpooled | 0.86158 | 0.699 |
WT/WTpooled | 1.08593 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05428 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92147 | 0.849 |
DC3000/delta hrp 6h | 1.03563 | 1 |
DC3000/delta hrp 12h | 1.00964 | 1 |
DC3000/delta hrp 24h | 1.28478 | 0.095 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.38847 | 0.043 |
DC3000 delta B/DC3000 delta AB | 1.2642 | 0.115 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96066 | 1 |
Exp 36h | 1.35482 | 1 |
Exp 60h | 1.03089 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9857 | 1 |
Var 0h | 0.78885 | 1 |
Var 12h I row2-row1 | 1.03147 | 0.654 |
Var 12h NI row2-row1 | 0.98041 | 0.627 |
Var 36h I row2-row1 | 0.95677 | 1 |
Var 36h NI row2-row1 | 0.99025 | 0.852 |
Var 60h I row2-row1 | 0.97072 | 0.832 |
Var 60h NI row2-row1 | 0.97283 | 1 |
Time course 0hI-0hNI | 0.99217 | 1 |
Time course 12hI-12hNI | 1.00017 | 1 |
Time course 36hI-36hNI | 0.97907 | 0.559 |
Time course 60hI-60hNI | 1.34202 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.83397 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.2387 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.25453 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00952 | 0.448 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89505 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84407 | 1 |
Manapal/WT (break) | 0.92534 | 1 |
Manapal/WT (red) | 0.61284 | 0.181 |
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