Expression of 1-1-5.2.5.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40909 | 0.646 |
27DAP/17DAP | 1.87817 | 0.872 |
39DAP/27DAP | 0.7539 | 0.435 |
41DAP/39DAP | 1.20193 | 0.964 |
42DAP/41DAP | 1.18413 | 0.992 |
43DAP/42DAP | 1.55631 | 0.772 |
47DAP/43DAP | 1.76892 | 0.689 |
52DAP/47DAP | 1.50439 | 0.443 |
57DAP/52DAP | 1.64742 | 0.771 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47438 | 0.814 |
17DAP/reference | 0.52279 | |
27DAP/reference | 0.77793 | 0.24 |
39DAP/reference | 0.75611 | 0.315 |
41DAP/reference | 1.65306 | 0.015 |
42DAP/reference | 1.18031 | 0.414 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.34196 | 0.509 |
52DAP/reference | N/A | N/A |
57DAP/reference | 1.9378 | 0.783 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.72169 | |
27DAP/17DAP | 1.33032 | 0.287 |
39DAP/27DAP | 0.70605 | 0.068 |
41DAP/39DAP | 3.31516 | 0.579 |
42DAP/41DAP | 1.48124 | 0.795 |
43DAP/42DAP | 0.23927 | |
47DAP/43DAP | 2.79378 | 0.058 |
52DAP/47DAP | 0.99354 | 0.898 |
57DAP/52DAP | 0.37324 | 0.047 |
57DAP/7DAP | 1.15651 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9806 | 0.613 |
17DAP/reference | 0.72063 | 0.011 |
27DAP/reference | 0.69302 | 0.011 |
39DAP/reference | 0.83474 | 0.034 |
41DAP/reference | 0.87629 | 0.073 |
42DAP/reference | 0.73984 | 0.01 |
43DAP/reference | 0.73234 | 0.015 |
47DAP/reference | 0.65195 | 0.128 |
52DAP/reference | 0.71171 | 0.024 |
57DAP/reference | 0.75961 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.60792 | |
17DAP/reference | 2.60559 | |
27DAP/reference | 0.88547 | 0.537 |
39DAP/reference | 1.80297 | 0.015 |
41DAP/reference | 0.8343 | 0.459 |
42DAP/reference | 0.60136 | |
43DAP/reference | 0.98259 | 0.633 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.4117 | 0.011 |
57DAP/reference | 1.62795 | 0.078 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86709 | 0.169 |
17DAP/reference | 0.93141 | 0.381 |
27DAP/reference | 0.77378 | 0.03 |
39DAP/reference | 0.70941 | 0.013 |
41DAP/reference | 0.92952 | 0.293 |
42DAP/reference | 0.71859 | 0.016 |
43DAP/reference | 0.82632 | 0.131 |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.80232 | 0.153 |
57DAP/reference | 1.07671 | 0.694 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19477 | 1 |
26DAP/20DAP | 0.89313 | 1 |
34DAP/26DAP | 1.67257 | 1 |
51DAP/34DAP | 1.7337 | |
52DAP/51DAP | 1.04301 | 1 |
53DAP/52DAP | 1.0446 | 0.845 |
55DAP/53DAP | 1.3483 | 0.104 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.56423 | 0.22 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.39606 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.18427 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.60048 | 1 |
IL7-3/WTpooled | 1.05235 | 1 |
IL12-4/WTpooled | 0.9024 | 0.71 |
IL1-4/WTpooled | 1.05354 | 0.426 |
WT/WTpooled | 0.84273 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.16861 | 0.936 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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