Expression of 1-1-5.2.5.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.409090.646
27DAP/17DAP1.878170.872
39DAP/27DAP0.75390.435
41DAP/39DAP1.201930.964
42DAP/41DAP1.184130.992
43DAP/42DAP1.556310.772
47DAP/43DAP1.768920.689
52DAP/47DAP1.504390.443
57DAP/52DAP1.647420.771

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.474380.814
17DAP/reference0.52279
27DAP/reference0.777930.24
39DAP/reference0.756110.315
41DAP/reference1.653060.015
42DAP/reference1.180310.414
43DAP/referenceN/AN/A
47DAP/reference1.341960.509
52DAP/referenceN/AN/A
57DAP/reference1.93780.783

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.72169
27DAP/17DAP1.330320.287
39DAP/27DAP0.706050.068
41DAP/39DAP3.315160.579
42DAP/41DAP1.481240.795
43DAP/42DAP0.23927
47DAP/43DAP2.793780.058
52DAP/47DAP0.993540.898
57DAP/52DAP0.373240.047
57DAP/7DAP1.156511

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.98060.613
17DAP/reference0.720630.011
27DAP/reference0.693020.011
39DAP/reference0.834740.034
41DAP/reference0.876290.073
42DAP/reference0.739840.01
43DAP/reference0.732340.015
47DAP/reference0.651950.128
52DAP/reference0.711710.024
57DAP/reference0.759610.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.60792
17DAP/reference2.60559
27DAP/reference0.885470.537
39DAP/reference1.802970.015
41DAP/reference0.83430.459
42DAP/reference0.60136
43DAP/reference0.982590.633
47DAP/referenceN/AN/A
52DAP/reference1.41170.011
57DAP/reference1.627950.078

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.867090.169
17DAP/reference0.931410.381
27DAP/reference0.773780.03
39DAP/reference0.709410.013
41DAP/reference0.929520.293
42DAP/reference0.718590.016
43DAP/reference0.826320.131
47DAP/referenceN/AN/A
52DAP/reference0.802320.153
57DAP/reference1.076710.694

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.194771
26DAP/20DAP0.893131
34DAP/26DAP1.672571
51DAP/34DAP1.7337
52DAP/51DAP1.043011
53DAP/52DAP1.04460.845
55DAP/53DAP1.34830.104
57DAP/55DAPN/AN/A
62DAP/57DAPN/AN/A
68DAP/62DAP1.564230.22
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.39606

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.184271
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.600481
IL7-3/WTpooled1.052351
IL12-4/WTpooled0.90240.71
IL1-4/WTpooled1.053540.426
WT/WTpooled0.842731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.168610.936
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A