Expression of 1-1-5.2.7.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.91672 | 0.138 |
27DAP/17DAP | 1.21241 | 0.778 |
39DAP/27DAP | 1.57042 | 0.159 |
41DAP/39DAP | 0.65103 | 0.068 |
42DAP/41DAP | 1.10174 | 0.949 |
43DAP/42DAP | 1.19052 | 0.861 |
47DAP/43DAP | 0.90906 | 0.687 |
52DAP/47DAP | 0.83687 | 0.574 |
57DAP/52DAP | 1.10674 | 0.652 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84544 | 0.059 |
17DAP/reference | 1.13364 | 0.306 |
27DAP/reference | 1.10576 | 0.339 |
39DAP/reference | 1.15832 | 0.125 |
41DAP/reference | 1.13443 | 0.015 |
42DAP/reference | 1.13757 | 0.08 |
43DAP/reference | 1.19683 | 0.102 |
47DAP/reference | 1.24936 | 0.001 |
52DAP/reference | 1.103 | 0.302 |
57DAP/reference | 1.17224 | 0.22 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1046 | 0.372 |
27DAP/17DAP | 0.97175 | 0.887 |
39DAP/27DAP | 1.0924 | 0.548 |
41DAP/39DAP | 0.93815 | 0.299 |
42DAP/41DAP | 1.04157 | 1 |
43DAP/42DAP | 1.47822 | 0.513 |
47DAP/43DAP | 0.98249 | 0.939 |
52DAP/47DAP | 0.82315 | 0.491 |
57DAP/52DAP | 0.90595 | 0.436 |
57DAP/7DAP | 0.66193 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09278 | 0.311 |
17DAP/reference | 1.00097 | 0.599 |
27DAP/reference | 1.13952 | 0.301 |
39DAP/reference | 0.87506 | 0.064 |
41DAP/reference | 1.07578 | 0.593 |
42DAP/reference | 0.79985 | 0.032 |
43DAP/reference | 0.91172 | 0.175 |
47DAP/reference | 1.24754 | 0.324 |
52DAP/reference | 0.83182 | 0.057 |
57DAP/reference | 1.12997 | 0.094 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88758 | 0.145 |
17DAP/reference | 0.94461 | 0.214 |
27DAP/reference | 1.02908 | 1 |
39DAP/reference | 0.98452 | 0.497 |
41DAP/reference | 0.85832 | 0.089 |
42DAP/reference | 0.99798 | 0.655 |
43DAP/reference | 1.05935 | 0.817 |
47DAP/reference | 1.06733 | 0.138 |
52DAP/reference | 1.0809 | 0.208 |
57DAP/reference | 1.34397 | 0.26 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88535 | 0.214 |
17DAP/reference | 0.98551 | 0.727 |
27DAP/reference | 0.96796 | 0.516 |
39DAP/reference | 1.16264 | 0.733 |
41DAP/reference | 0.96758 | 0.618 |
42DAP/reference | 1.08765 | 0.424 |
43DAP/reference | 1.17594 | 0.572 |
47DAP/reference | 1.52789 | 0.005 |
52DAP/reference | 1.37228 | 0.335 |
57DAP/reference | 0.86712 | 0.07 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10278 | 0.966 |
26DAP/20DAP | 1.00809 | 1 |
34DAP/26DAP | 0.9831 | 1 |
51DAP/34DAP | 1.08452 | 0.775 |
52DAP/51DAP | 0.94405 | 1 |
53DAP/52DAP | 1.22447 | 0.819 |
55DAP/53DAP | 1.01778 | 1 |
57DAP/55DAP | 1.19827 | 0.34 |
62DAP/57DAP | 0.68035 | 0.162 |
68DAP/62DAP | 0.81832 | 0.378 |
68DAP/14DAP | 0.94618 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.76924 | 0.108 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.03724 | |
Mature Green Tomato/Ripe Tomato | 1.01003 | 1 |
Immature Eggplant/Mature Eggplant | 2.20528 | 0.055 |
Ripe Pepper/Ripe Tomato | 0.92659 | 1 |
Mature Eggplant/Ripe Tomato | 1.23353 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.19185 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.72553 | 1 |
1-3/M82 | 0.99246 | |
2-1-1/M82 | 0.58622 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.66432 | |
3-2/M82 | 1.04897 | |
4-1-1/M82 | 0.52931 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.09415 | 1 |
4-3/M82 | 0.91987 | 1 |
5-3/M82 | 0.9154 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.52089 | |
7-2/M82 | 0.83691 | |
9-3-2/M82 | 1.23239 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90829 | |
IL2-6/WTpooled | 0.9713 | 1 |
IL7-5/WTpooled | 1.0037 | 1 |
IL7-3/WTpooled | 0.88849 | 1 |
IL12-4/WTpooled | 0.99643 | 1 |
IL1-4/WTpooled | 1.128 | 0.426 |
WT/WTpooled | 0.98513 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87879 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08791 | |
DC3000/delta hrp 6h | 1.1087 | 0.95 |
DC3000/delta hrp 12h | 0.99483 | 1 |
DC3000/delta hrp 24h | 0.94867 | 0.662 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.83228 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.14237 | 1 |
Exp 36h | 1.68743 | 0.371 |
Exp 60h | 1.41605 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08342 | 1 |
Var 0h | 1.50437 | 0.936 |
Var 12h I row2-row1 | 1.28566 | 0.263 |
Var 12h NI row2-row1 | 1.50926 | 0.34 |
Var 36h I row2-row1 | 0.63332 | 0.575 |
Var 36h NI row2-row1 | 1.23434 | 0.482 |
Var 60h I row2-row1 | 0.9609 | 0.952 |
Var 60h NI row2-row1 | 1.10276 | 0.904 |
Time course 0hI-0hNI | 0.95617 | 0.801 |
Time course 12hI-12hNI | 1.07939 | 0.647 |
Time course 36hI-36hNI | 0.9239 | 0.097 |
Time course 60hI-60hNI | 0.76336 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.79475 | 0.289 |
transgenic ySAMdc/azygous control (breaker) | 1.04048 | 1 |
transgenic ySAMdc/azygous control (red) | 0.90601 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04261 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82304 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82355 | 1 |
Manapal/WT (break) | 0.64241 | 0.333 |
Manapal/WT (red) | 0.76218 | 0.229 |
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