Expression of 1-1-5.2.7.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.916720.138
27DAP/17DAP1.212410.778
39DAP/27DAP1.570420.159
41DAP/39DAP0.651030.068
42DAP/41DAP1.101740.949
43DAP/42DAP1.190520.861
47DAP/43DAP0.909060.687
52DAP/47DAP0.836870.574
57DAP/52DAP1.106740.652

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.845440.059
17DAP/reference1.133640.306
27DAP/reference1.105760.339
39DAP/reference1.158320.125
41DAP/reference1.134430.015
42DAP/reference1.137570.08
43DAP/reference1.196830.102
47DAP/reference1.249360.001
52DAP/reference1.1030.302
57DAP/reference1.172240.22

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.10460.372
27DAP/17DAP0.971750.887
39DAP/27DAP1.09240.548
41DAP/39DAP0.938150.299
42DAP/41DAP1.041571
43DAP/42DAP1.478220.513
47DAP/43DAP0.982490.939
52DAP/47DAP0.823150.491
57DAP/52DAP0.905950.436
57DAP/7DAP0.661931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092780.311
17DAP/reference1.000970.599
27DAP/reference1.139520.301
39DAP/reference0.875060.064
41DAP/reference1.075780.593
42DAP/reference0.799850.032
43DAP/reference0.911720.175
47DAP/reference1.247540.324
52DAP/reference0.831820.057
57DAP/reference1.129970.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.887580.145
17DAP/reference0.944610.214
27DAP/reference1.029081
39DAP/reference0.984520.497
41DAP/reference0.858320.089
42DAP/reference0.997980.655
43DAP/reference1.059350.817
47DAP/reference1.067330.138
52DAP/reference1.08090.208
57DAP/reference1.343970.26

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.885350.214
17DAP/reference0.985510.727
27DAP/reference0.967960.516
39DAP/reference1.162640.733
41DAP/reference0.967580.618
42DAP/reference1.087650.424
43DAP/reference1.175940.572
47DAP/reference1.527890.005
52DAP/reference1.372280.335
57DAP/reference0.867120.07

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.102780.966
26DAP/20DAP1.008091
34DAP/26DAP0.98311
51DAP/34DAP1.084520.775
52DAP/51DAP0.944051
53DAP/52DAP1.224470.819
55DAP/53DAP1.017781
57DAP/55DAP1.198270.34
62DAP/57DAP0.680350.162
68DAP/62DAP0.818320.378
68DAP/14DAP0.946181

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.769240.108

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.03724
Mature Green Tomato/Ripe Tomato1.010031
Immature Eggplant/Mature Eggplant2.205280.055
Ripe Pepper/Ripe Tomato0.926591
Mature Eggplant/Ripe Tomato1.233531

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.19185
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.725531
1-3/M820.99246
2-1-1/M820.58622
2-1/M82N/AN/A
2-6/M820.66432
3-2/M821.04897
4-1-1/M820.52931
4-1/M82N/AN/A
4-3-2/M821.094151
4-3/M820.919871
5-3/M820.91541
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.52089
7-2/M820.83691
9-3-2/M821.232391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.90829
IL2-6/WTpooled0.97131
IL7-5/WTpooled1.00371
IL7-3/WTpooled0.888491
IL12-4/WTpooled0.996431
IL1-4/WTpooled1.1280.426
WT/WTpooled0.985131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.878790.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.08791
DC3000/delta hrp 6h1.10870.95
DC3000/delta hrp 12h0.994831
DC3000/delta hrp 24h0.948670.662

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.83228

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.142371
Exp 36h1.687430.371
Exp 60h1.416050.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.083421
Var 0h1.504370.936
Var 12h I row2-row11.285660.263
Var 12h NI row2-row11.509260.34
Var 36h I row2-row10.633320.575
Var 36h NI row2-row11.234340.482
Var 60h I row2-row10.96090.952
Var 60h NI row2-row11.102760.904
Time course 0hI-0hNI0.956170.801
Time course 12hI-12hNI1.079390.647
Time course 36hI-36hNI0.92390.097
Time course 60hI-60hNI0.763360.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.794750.289
transgenic ySAMdc/azygous control (breaker)1.040481
transgenic ySAMdc/azygous control (red)0.906011

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.042610.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.823040.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.823551
Manapal/WT (break)0.642410.333
Manapal/WT (red)0.762180.229