Expression of 1-1-5.2.7.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.937330.671
27DAP/17DAP0.954850.947
39DAP/27DAP1.858730.128
41DAP/39DAP1.989440.14
42DAP/41DAP2.578480.016
43DAP/42DAP1.532350.299
47DAP/43DAP1.413370.193
52DAP/47DAP0.780240.417
57DAP/52DAP1.346010.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.093930.384
17DAP/reference1.039960.585
27DAP/reference1.088080.548
39DAP/reference1.18130.403
41DAP/reference1.042590.808
42DAP/reference1.070020.504
43DAP/reference1.080150.34
47DAP/reference1.084920.295
52DAP/reference1.17230.121
57DAP/reference1.398410.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.407780.048
27DAP/17DAP1.294120.246
39DAP/27DAP2.9780.04
41DAP/39DAP0.324180.013
42DAP/41DAP4.831690.002
43DAP/42DAP5.947440.013
47DAP/43DAP1.07750.822
52DAP/47DAP1.061540.987
57DAP/52DAP0.575370.047
57DAP/7DAP3.674290.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.083540.393
17DAP/reference1.000440.693
27DAP/reference0.910020.283
39DAP/reference1.34750.015
41DAP/reference0.968320.469
42DAP/reference1.070340.405
43DAP/reference0.968920.459
47DAP/reference1.11650.537
52DAP/reference1.126120.781
57DAP/reference1.149520.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.951290.487
17DAP/reference0.958750.317
27DAP/reference1.022341
39DAP/reference0.913160.214
41DAP/reference1.133130.262
42DAP/reference1.102940.22
43DAP/reference1.065890.854
47DAP/reference1.014651
52DAP/reference0.860530.055
57DAP/reference0.912380.208

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.038260.882
17DAP/reference1.08880.518
27DAP/reference1.037740.644
39DAP/reference1.094270.546
41DAP/reference1.066760.754
42DAP/reference1.234940.364
43DAP/reference1.339150.012
47DAP/reference1.129560.196
52DAP/reference1.353160.17
57DAP/reference1.217670.2

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.763740.033
26DAP/20DAP0.876670.317
34DAP/26DAP0.955781
51DAP/34DAP1.79150.032
52DAP/51DAP1.045950.542
53DAP/52DAP9.43390.021
55DAP/53DAP1.439260.083
57DAP/55DAP1.071261
62DAP/57DAP0.06260.002
68DAP/62DAP2.107950.747
68DAP/14DAP0.970181

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker21.21660.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.636540.154
Mature Green Tomato/Ripe Tomato0.147530.017
Immature Eggplant/Mature Eggplant1.289590.061
Ripe Pepper/Ripe Tomato1.096431
Mature Eggplant/Ripe Tomato0.441631

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.372880.877
1-1-2/M821.106781
12-2/M821.083251
12-4/M821.696611
1-3/M822.061210.255
2-1-1/M821.029911
2-1/M820.885831
2-6/M820.912091
3-2/M820.06696
4-1-1/M821.287651
4-1/M821.209940.853
4-3-2/M821.223421
4-3/M820.939620.72
5-3/M821.037461
6-2/M821.182751
6-3/M821.018931
7-1/M820.923230.466
7-2/M821.277871
9-3-2/M821.483241

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.14940.493
IL2-6/WTpooled1.083761
IL7-5/WTpooled1.38060.635
IL7-3/WTpooled1.033131
IL12-4/WTpooled1.210760.785
IL1-4/WTpooled1.022661
WT/WTpooled1.014921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.238141

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.973991
DC3000/delta hrp 6h1.090570.95
DC3000/delta hrp 12h1.007721
DC3000/delta hrp 24h0.566480.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.11970.313
DC3000 delta B/DC3000 delta AB0.935880.558

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.18131
Exp 36h1.349091
Exp 60h1.304211

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.054471
Var 0h1.107430.98
Var 12h I row2-row10.954760.77
Var 12h NI row2-row11.192610.649
Var 36h I row2-row11.364770.601
Var 36h NI row2-row11.396160.276
Var 60h I row2-row10.700420.292
Var 60h NI row2-row11.301180.904
Time course 0hI-0hNI0.924220.468
Time course 12hI-12hNI0.975920.806
Time course 36hI-36hNI1.03290.881
Time course 60hI-60hNI0.699670.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.956030.614
transgenic ySAMdc/azygous control (breaker)1.379060.172
transgenic ySAMdc/azygous control (red)1.068731

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.132880.077

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.674760.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.741290.172
Manapal/WT (break)0.827660.333
Manapal/WT (red)1.422651