Expression of 1-1-5.2.7.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93733 | 0.671 |
27DAP/17DAP | 0.95485 | 0.947 |
39DAP/27DAP | 1.85873 | 0.128 |
41DAP/39DAP | 1.98944 | 0.14 |
42DAP/41DAP | 2.57848 | 0.016 |
43DAP/42DAP | 1.53235 | 0.299 |
47DAP/43DAP | 1.41337 | 0.193 |
52DAP/47DAP | 0.78024 | 0.417 |
57DAP/52DAP | 1.34601 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09393 | 0.384 |
17DAP/reference | 1.03996 | 0.585 |
27DAP/reference | 1.08808 | 0.548 |
39DAP/reference | 1.1813 | 0.403 |
41DAP/reference | 1.04259 | 0.808 |
42DAP/reference | 1.07002 | 0.504 |
43DAP/reference | 1.08015 | 0.34 |
47DAP/reference | 1.08492 | 0.295 |
52DAP/reference | 1.1723 | 0.121 |
57DAP/reference | 1.39841 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40778 | 0.048 |
27DAP/17DAP | 1.29412 | 0.246 |
39DAP/27DAP | 2.978 | 0.04 |
41DAP/39DAP | 0.32418 | 0.013 |
42DAP/41DAP | 4.83169 | 0.002 |
43DAP/42DAP | 5.94744 | 0.013 |
47DAP/43DAP | 1.0775 | 0.822 |
52DAP/47DAP | 1.06154 | 0.987 |
57DAP/52DAP | 0.57537 | 0.047 |
57DAP/7DAP | 3.67429 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08354 | 0.393 |
17DAP/reference | 1.00044 | 0.693 |
27DAP/reference | 0.91002 | 0.283 |
39DAP/reference | 1.3475 | 0.015 |
41DAP/reference | 0.96832 | 0.469 |
42DAP/reference | 1.07034 | 0.405 |
43DAP/reference | 0.96892 | 0.459 |
47DAP/reference | 1.1165 | 0.537 |
52DAP/reference | 1.12612 | 0.781 |
57DAP/reference | 1.14952 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95129 | 0.487 |
17DAP/reference | 0.95875 | 0.317 |
27DAP/reference | 1.02234 | 1 |
39DAP/reference | 0.91316 | 0.214 |
41DAP/reference | 1.13313 | 0.262 |
42DAP/reference | 1.10294 | 0.22 |
43DAP/reference | 1.06589 | 0.854 |
47DAP/reference | 1.01465 | 1 |
52DAP/reference | 0.86053 | 0.055 |
57DAP/reference | 0.91238 | 0.208 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03826 | 0.882 |
17DAP/reference | 1.0888 | 0.518 |
27DAP/reference | 1.03774 | 0.644 |
39DAP/reference | 1.09427 | 0.546 |
41DAP/reference | 1.06676 | 0.754 |
42DAP/reference | 1.23494 | 0.364 |
43DAP/reference | 1.33915 | 0.012 |
47DAP/reference | 1.12956 | 0.196 |
52DAP/reference | 1.35316 | 0.17 |
57DAP/reference | 1.21767 | 0.2 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.76374 | 0.033 |
26DAP/20DAP | 0.87667 | 0.317 |
34DAP/26DAP | 0.95578 | 1 |
51DAP/34DAP | 1.7915 | 0.032 |
52DAP/51DAP | 1.04595 | 0.542 |
53DAP/52DAP | 9.4339 | 0.021 |
55DAP/53DAP | 1.43926 | 0.083 |
57DAP/55DAP | 1.07126 | 1 |
62DAP/57DAP | 0.0626 | 0.002 |
68DAP/62DAP | 2.10795 | 0.747 |
68DAP/14DAP | 0.97018 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 21.2166 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.63654 | 0.154 |
Mature Green Tomato/Ripe Tomato | 0.14753 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.28959 | 0.061 |
Ripe Pepper/Ripe Tomato | 1.09643 | 1 |
Mature Eggplant/Ripe Tomato | 0.44163 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.37288 | 0.877 |
1-1-2/M82 | 1.10678 | 1 |
12-2/M82 | 1.08325 | 1 |
12-4/M82 | 1.69661 | 1 |
1-3/M82 | 2.06121 | 0.255 |
2-1-1/M82 | 1.02991 | 1 |
2-1/M82 | 0.88583 | 1 |
2-6/M82 | 0.91209 | 1 |
3-2/M82 | 0.06696 | |
4-1-1/M82 | 1.28765 | 1 |
4-1/M82 | 1.20994 | 0.853 |
4-3-2/M82 | 1.22342 | 1 |
4-3/M82 | 0.93962 | 0.72 |
5-3/M82 | 1.03746 | 1 |
6-2/M82 | 1.18275 | 1 |
6-3/M82 | 1.01893 | 1 |
7-1/M82 | 0.92323 | 0.466 |
7-2/M82 | 1.27787 | 1 |
9-3-2/M82 | 1.48324 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.1494 | 0.493 |
IL2-6/WTpooled | 1.08376 | 1 |
IL7-5/WTpooled | 1.3806 | 0.635 |
IL7-3/WTpooled | 1.03313 | 1 |
IL12-4/WTpooled | 1.21076 | 0.785 |
IL1-4/WTpooled | 1.02266 | 1 |
WT/WTpooled | 1.01492 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.23814 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97399 | 1 |
DC3000/delta hrp 6h | 1.09057 | 0.95 |
DC3000/delta hrp 12h | 1.00772 | 1 |
DC3000/delta hrp 24h | 0.56648 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.1197 | 0.313 |
DC3000 delta B/DC3000 delta AB | 0.93588 | 0.558 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1813 | 1 |
Exp 36h | 1.34909 | 1 |
Exp 60h | 1.30421 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05447 | 1 |
Var 0h | 1.10743 | 0.98 |
Var 12h I row2-row1 | 0.95476 | 0.77 |
Var 12h NI row2-row1 | 1.19261 | 0.649 |
Var 36h I row2-row1 | 1.36477 | 0.601 |
Var 36h NI row2-row1 | 1.39616 | 0.276 |
Var 60h I row2-row1 | 0.70042 | 0.292 |
Var 60h NI row2-row1 | 1.30118 | 0.904 |
Time course 0hI-0hNI | 0.92422 | 0.468 |
Time course 12hI-12hNI | 0.97592 | 0.806 |
Time course 36hI-36hNI | 1.0329 | 0.881 |
Time course 60hI-60hNI | 0.69967 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95603 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 1.37906 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.06873 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.13288 | 0.077 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.67476 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74129 | 0.172 |
Manapal/WT (break) | 0.82766 | 0.333 |
Manapal/WT (red) | 1.42265 | 1 |
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