Expression of 1-1-5.2.8.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07442 | 0.798 |
27DAP/17DAP | 0.77448 | 0.43 |
39DAP/27DAP | 1.63151 | 0.44 |
41DAP/39DAP | 2.18759 | 0.265 |
42DAP/41DAP | 2.48927 | 0.016 |
43DAP/42DAP | 1.59269 | 0.662 |
47DAP/43DAP | 1.33177 | 0.229 |
52DAP/47DAP | 0.64461 | 0.133 |
57DAP/52DAP | 1.56054 | 0.638 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90177 | 0.182 |
17DAP/reference | 1.09883 | 0.185 |
27DAP/reference | 1.14305 | 0.103 |
39DAP/reference | 1.18739 | 0.153 |
41DAP/reference | 1.32795 | 0.036 |
42DAP/reference | 1.28833 | 0.033 |
43DAP/reference | 1.30142 | 0.013 |
47DAP/reference | 1.49218 | 0.002 |
52DAP/reference | 1.08745 | 0.73 |
57DAP/reference | 1.09016 | 0.952 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96908 | 0.644 |
27DAP/17DAP | 1.2109 | 0.407 |
39DAP/27DAP | 1.27005 | 0.151 |
41DAP/39DAP | 0.67263 | 0.101 |
42DAP/41DAP | 1.96466 | 0.003 |
43DAP/42DAP | 2.93127 | 0.013 |
47DAP/43DAP | 1.03634 | 0.951 |
52DAP/47DAP | 1.02854 | 0.982 |
57DAP/52DAP | 0.6641 | 0.075 |
57DAP/7DAP | 1.59669 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02254 | 0.98 |
17DAP/reference | 1.12728 | 0.437 |
27DAP/reference | 1.07078 | 0.664 |
39DAP/reference | 1.0477 | 0.705 |
41DAP/reference | 0.81737 | 0.122 |
42DAP/reference | 1.13177 | 0.686 |
43DAP/reference | 1.08118 | 1 |
47DAP/reference | 1.05333 | 0.948 |
52DAP/reference | 0.9312 | 0.398 |
57DAP/reference | 1.02415 | 0.775 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0412 | 1 |
17DAP/reference | 0.89768 | 0.253 |
27DAP/reference | 1.34361 | 0.028 |
39DAP/reference | 1.11427 | 0.602 |
41DAP/reference | 1.03445 | 1 |
42DAP/reference | 1.41159 | 0.03 |
43DAP/reference | 1.04087 | 0.802 |
47DAP/reference | 1.4549 | 0.012 |
52DAP/reference | 0.95193 | 0.407 |
57DAP/reference | 0.81096 | 0.023 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26422 | 0.103 |
17DAP/reference | 0.88893 | 0.221 |
27DAP/reference | 1.60308 | 0.392 |
39DAP/reference | 0.90663 | 0.163 |
41DAP/reference | 0.95912 | 0.512 |
42DAP/reference | 1.11509 | 0.521 |
43DAP/reference | 1.10607 | 0.71 |
47DAP/reference | 1.18055 | 0.388 |
52DAP/reference | 1.07453 | 0.826 |
57DAP/reference | 1.08464 | 0.79 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91898 | 1 |
26DAP/20DAP | 1.15445 | |
34DAP/26DAP | 1.44687 | 0.096 |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 0.84102 | 1 |
53DAP/52DAP | 1.77383 | 0.072 |
55DAP/53DAP | 1.43554 | 0.039 |
57DAP/55DAP | 1.60645 | 0.682 |
62DAP/57DAP | 0.39268 | 0.003 |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 1.57446 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 5.5957 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.08417 | 0.045 |
Immature Eggplant/Mature Eggplant | 1.29434 | 0.096 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 2.25489 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.22246 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.43698 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.57452 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.08593 | 0.414 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 2.45492 | 0.853 |
4-3-2/M82 | 1.45256 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.27218 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.93202 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.64285 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.89191 | |
IL1-4/WTpooled | 1.31823 | 1 |
WT/WTpooled | 0.5549 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84247 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.84176 | |
DC3000/delta hrp 6h | 1.21816 | 1 |
DC3000/delta hrp 12h | 0.96178 | 1 |
DC3000/delta hrp 24h | 0.99552 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.11578 | 0.42 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00379 | 1 |
Exp 36h | 0.92898 | 0.82 |
Exp 60h | 1.02843 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96119 | 1 |
Var 0h | 0.72003 | 1 |
Var 12h I row2-row1 | 1.01838 | 0.736 |
Var 12h NI row2-row1 | 1.03898 | 0.649 |
Var 36h I row2-row1 | 1.14324 | 0.41 |
Var 36h NI row2-row1 | 1.09568 | 0.482 |
Var 60h I row2-row1 | 0.87673 | 0.292 |
Var 60h NI row2-row1 | 1.19813 | 0.904 |
Time course 0hI-0hNI | 0.91936 | 0.446 |
Time course 12hI-12hNI | 0.99305 | 1 |
Time course 36hI-36hNI | 1.00637 | 0.89 |
Time course 60hI-60hNI | 0.71952 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07605 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 1.36721 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.90307 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.18138 | 0.096 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02425 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80511 | 1 |
Manapal/WT (break) | 0.8272 | 0.333 |
Manapal/WT (red) | 0.84411 | 0.36 |
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