Expression of 1-1-5.2.8.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.074420.798
27DAP/17DAP0.774480.43
39DAP/27DAP1.631510.44
41DAP/39DAP2.187590.265
42DAP/41DAP2.489270.016
43DAP/42DAP1.592690.662
47DAP/43DAP1.331770.229
52DAP/47DAP0.644610.133
57DAP/52DAP1.560540.638

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.901770.182
17DAP/reference1.098830.185
27DAP/reference1.143050.103
39DAP/reference1.187390.153
41DAP/reference1.327950.036
42DAP/reference1.288330.033
43DAP/reference1.301420.013
47DAP/reference1.492180.002
52DAP/reference1.087450.73
57DAP/reference1.090160.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.969080.644
27DAP/17DAP1.21090.407
39DAP/27DAP1.270050.151
41DAP/39DAP0.672630.101
42DAP/41DAP1.964660.003
43DAP/42DAP2.931270.013
47DAP/43DAP1.036340.951
52DAP/47DAP1.028540.982
57DAP/52DAP0.66410.075
57DAP/7DAP1.596690.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.022540.98
17DAP/reference1.127280.437
27DAP/reference1.070780.664
39DAP/reference1.04770.705
41DAP/reference0.817370.122
42DAP/reference1.131770.686
43DAP/reference1.081181
47DAP/reference1.053330.948
52DAP/reference0.93120.398
57DAP/reference1.024150.775

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04121
17DAP/reference0.897680.253
27DAP/reference1.343610.028
39DAP/reference1.114270.602
41DAP/reference1.034451
42DAP/reference1.411590.03
43DAP/reference1.040870.802
47DAP/reference1.45490.012
52DAP/reference0.951930.407
57DAP/reference0.810960.023

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.264220.103
17DAP/reference0.888930.221
27DAP/reference1.603080.392
39DAP/reference0.906630.163
41DAP/reference0.959120.512
42DAP/reference1.115090.521
43DAP/reference1.106070.71
47DAP/reference1.180550.388
52DAP/reference1.074530.826
57DAP/reference1.084640.79

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.918981
26DAP/20DAP1.15445
34DAP/26DAP1.446870.096
51DAP/34DAPN/AN/A
52DAP/51DAP0.841021
53DAP/52DAP1.773830.072
55DAP/53DAP1.435540.039
57DAP/55DAP1.606450.682
62DAP/57DAP0.392680.003
68DAP/62DAPN/AN/A
68DAP/14DAP1.574460.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker5.59570.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.084170.045
Immature Eggplant/Mature Eggplant1.294340.096
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato2.25489

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.222461
12-2/M82N/AN/A
12-4/M821.436981
1-3/M82N/AN/A
2-1-1/M820.57452
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.085930.414
4-1-1/M82N/AN/A
4-1/M822.454920.853
4-3-2/M821.45256
4-3/M82N/AN/A
5-3/M821.272181
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.93202
7-2/M82N/AN/A
9-3-2/M821.642851

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.89191
IL1-4/WTpooled1.318231
WT/WTpooled0.5549

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.842470.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.84176
DC3000/delta hrp 6h1.218161
DC3000/delta hrp 12h0.961781
DC3000/delta hrp 24h0.995521

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.115780.42

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.003791
Exp 36h0.928980.82
Exp 60h1.028431

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.961191
Var 0h0.720031
Var 12h I row2-row11.018380.736
Var 12h NI row2-row11.038980.649
Var 36h I row2-row11.143240.41
Var 36h NI row2-row11.095680.482
Var 60h I row2-row10.876730.292
Var 60h NI row2-row11.198130.904
Time course 0hI-0hNI0.919360.446
Time course 12hI-12hNI0.993051
Time course 36hI-36hNI1.006370.89
Time course 60hI-60hNI0.719520.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.076050.212
transgenic ySAMdc/azygous control (breaker)1.367210.178
transgenic ySAMdc/azygous control (red)0.903071

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.181380.096

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.024251

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.805111
Manapal/WT (break)0.82720.333
Manapal/WT (red)0.844110.36