Expression of 1-1-5.2.8.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18439 | 0.575 |
27DAP/17DAP | 0.73511 | 0.272 |
39DAP/27DAP | 1.10676 | 0.765 |
41DAP/39DAP | 0.86474 | 0.457 |
42DAP/41DAP | 1.1358 | 0.813 |
43DAP/42DAP | 1.06587 | 1 |
47DAP/43DAP | 0.97721 | 0.876 |
52DAP/47DAP | 0.93605 | 0.746 |
57DAP/52DAP | 1.08647 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96383 | 0.489 |
17DAP/reference | 1.12139 | 0.017 |
27DAP/reference | 1.10827 | 0.132 |
39DAP/reference | 1.0489 | 0.497 |
41DAP/reference | 1.10709 | 0.158 |
42DAP/reference | 0.95786 | 0.069 |
43DAP/reference | 1.04758 | 0.471 |
47DAP/reference | 0.99467 | 0.636 |
52DAP/reference | 0.80854 | 0.064 |
57DAP/reference | 0.91534 | 0.277 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19047 | 0.076 |
27DAP/17DAP | 0.82462 | 0.158 |
39DAP/27DAP | 0.68911 | 0.032 |
41DAP/39DAP | 1.09721 | 0.79 |
42DAP/41DAP | 1.00385 | 0.894 |
43DAP/42DAP | 0.83487 | 0.037 |
47DAP/43DAP | 0.9353 | 0.559 |
52DAP/47DAP | 0.89049 | 0.591 |
57DAP/52DAP | 0.94668 | 0.598 |
57DAP/7DAP | 0.83859 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1568 | 0.318 |
17DAP/reference | 1.29189 | 0.123 |
27DAP/reference | 1.14673 | 0.804 |
39DAP/reference | 0.97415 | 0.552 |
41DAP/reference | 1.1385 | 0.325 |
42DAP/reference | 1.10631 | 0.132 |
43DAP/reference | 1.01525 | 1 |
47DAP/reference | 1.0663 | 0.413 |
52DAP/reference | 1.23966 | 0.058 |
57DAP/reference | 1.08872 | 0.654 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10783 | 0.125 |
17DAP/reference | 1.07965 | 0.216 |
27DAP/reference | 1.34367 | 0.188 |
39DAP/reference | 1.19674 | 0.023 |
41DAP/reference | 1.02424 | 0.91 |
42DAP/reference | 0.9742 | 0.392 |
43DAP/reference | 0.94854 | 0.494 |
47DAP/reference | 1.01232 | 1 |
52DAP/reference | 1.04585 | 0.702 |
57DAP/reference | 1.03184 | 0.593 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05539 | 0.882 |
17DAP/reference | 0.99693 | 0.825 |
27DAP/reference | 1.14703 | 0.105 |
39DAP/reference | 1.06464 | 0.512 |
41DAP/reference | 1.22932 | 0.319 |
42DAP/reference | 0.98727 | 0.816 |
43DAP/reference | 1.04699 | 1 |
47DAP/reference | 0.96731 | 0.371 |
52DAP/reference | 1.20059 | 0.398 |
57DAP/reference | 0.96032 | 0.516 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97748 | 1 |
26DAP/20DAP | 1.13722 | 0.594 |
34DAP/26DAP | 0.95954 | 0.92 |
51DAP/34DAP | 0.81843 | 0.161 |
52DAP/51DAP | 0.84027 | 0.151 |
53DAP/52DAP | 1.19567 | 0.58 |
55DAP/53DAP | 0.84344 | 0.169 |
57DAP/55DAP | 1.20026 | 0.906 |
62DAP/57DAP | 0.80742 | 0.162 |
68DAP/62DAP | 1.01253 | 0.885 |
68DAP/14DAP | 1.01102 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04272 | 0.954 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.76361 | 0.058 |
Mature Green Tomato/Ripe Tomato | 2.49098 | 0.016 |
Immature Eggplant/Mature Eggplant | 1.41253 | 0.052 |
Ripe Pepper/Ripe Tomato | 1.57253 | 1 |
Mature Eggplant/Ripe Tomato | 2.46176 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93626 | 0.944 |
1-1-2/M82 | 0.89842 | 0.804 |
12-2/M82 | 0.85794 | 0.678 |
12-4/M82 | 0.98403 | 1 |
1-3/M82 | 1.25748 | |
2-1-1/M82 | 1.04605 | |
2-1/M82 | 0.95442 | |
2-6/M82 | 1.07903 | 0.329 |
3-2/M82 | 1.01273 | 1 |
4-1-1/M82 | 0.78193 | 1 |
4-1/M82 | 1.0425 | 1 |
4-3-2/M82 | 1.06182 | 1 |
4-3/M82 | 0.90178 | 1 |
5-3/M82 | 1.11741 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.06121 | 1 |
7-1/M82 | 1.03423 | |
7-2/M82 | 0.91617 | |
9-3-2/M82 | 1.18488 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.79438 | 0.321 |
IL2-6/WTpooled | 1.04599 | 1 |
IL7-5/WTpooled | 1.20024 | 0.792 |
IL7-3/WTpooled | 0.74779 | 0.31 |
IL12-4/WTpooled | 0.75869 | 0.581 |
IL1-4/WTpooled | 0.92781 | 1 |
WT/WTpooled | 0.96395 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01582 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94317 | 0.664 |
DC3000/delta hrp 6h | 0.92941 | 0.95 |
DC3000/delta hrp 12h | 1.00791 | 1 |
DC3000/delta hrp 24h | 1.03653 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.83042 | 0.365 |
DC3000 delta B/DC3000 delta AB | 0.86952 | 0.129 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89873 | 1 |
Exp 36h | 1.70183 | 1 |
Exp 60h | 0.98453 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95315 | 1 |
Var 0h | 1.06716 | 1 |
Var 12h I row2-row1 | 0.89277 | 0.338 |
Var 12h NI row2-row1 | 0.95248 | 0.906 |
Var 36h I row2-row1 | 1.02616 | 1 |
Var 36h NI row2-row1 | 1.10819 | 1 |
Var 60h I row2-row1 | 0.75386 | 0.285 |
Var 60h NI row2-row1 | 0.99992 | 1 |
Time course 0hI-0hNI | 0.9753 | 0.908 |
Time course 12hI-12hNI | 1.03161 | 0.756 |
Time course 36hI-36hNI | 1.0381 | 0.453 |
Time course 60hI-60hNI | 1.03857 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.46545 | 0.23 |
transgenic ySAMdc/azygous control (breaker) | 1.05788 | 1 |
transgenic ySAMdc/azygous control (red) | 1.01529 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06718 | 0.063 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89183 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.45426 | 0.172 |
Manapal/WT (break) | 1.03626 | 1 |
Manapal/WT (red) | 1.21992 | 1 |
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