Expression of 1-1-5.2.8.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.184390.575
27DAP/17DAP0.735110.272
39DAP/27DAP1.106760.765
41DAP/39DAP0.864740.457
42DAP/41DAP1.13580.813
43DAP/42DAP1.065871
47DAP/43DAP0.977210.876
52DAP/47DAP0.936050.746
57DAP/52DAP1.086470.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.963830.489
17DAP/reference1.121390.017
27DAP/reference1.108270.132
39DAP/reference1.04890.497
41DAP/reference1.107090.158
42DAP/reference0.957860.069
43DAP/reference1.047580.471
47DAP/reference0.994670.636
52DAP/reference0.808540.064
57DAP/reference0.915340.277

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.190470.076
27DAP/17DAP0.824620.158
39DAP/27DAP0.689110.032
41DAP/39DAP1.097210.79
42DAP/41DAP1.003850.894
43DAP/42DAP0.834870.037
47DAP/43DAP0.93530.559
52DAP/47DAP0.890490.591
57DAP/52DAP0.946680.598
57DAP/7DAP0.838590.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.15680.318
17DAP/reference1.291890.123
27DAP/reference1.146730.804
39DAP/reference0.974150.552
41DAP/reference1.13850.325
42DAP/reference1.106310.132
43DAP/reference1.015251
47DAP/reference1.06630.413
52DAP/reference1.239660.058
57DAP/reference1.088720.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.107830.125
17DAP/reference1.079650.216
27DAP/reference1.343670.188
39DAP/reference1.196740.023
41DAP/reference1.024240.91
42DAP/reference0.97420.392
43DAP/reference0.948540.494
47DAP/reference1.012321
52DAP/reference1.045850.702
57DAP/reference1.031840.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.055390.882
17DAP/reference0.996930.825
27DAP/reference1.147030.105
39DAP/reference1.064640.512
41DAP/reference1.229320.319
42DAP/reference0.987270.816
43DAP/reference1.046991
47DAP/reference0.967310.371
52DAP/reference1.200590.398
57DAP/reference0.960320.516

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.977481
26DAP/20DAP1.137220.594
34DAP/26DAP0.959540.92
51DAP/34DAP0.818430.161
52DAP/51DAP0.840270.151
53DAP/52DAP1.195670.58
55DAP/53DAP0.843440.169
57DAP/55DAP1.200260.906
62DAP/57DAP0.807420.162
68DAP/62DAP1.012530.885
68DAP/14DAP1.011021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.042720.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.763610.058
Mature Green Tomato/Ripe Tomato2.490980.016
Immature Eggplant/Mature Eggplant1.412530.052
Ripe Pepper/Ripe Tomato1.572531
Mature Eggplant/Ripe Tomato2.461760.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.936260.944
1-1-2/M820.898420.804
12-2/M820.857940.678
12-4/M820.984031
1-3/M821.25748
2-1-1/M821.04605
2-1/M820.95442
2-6/M821.079030.329
3-2/M821.012731
4-1-1/M820.781931
4-1/M821.04251
4-3-2/M821.061821
4-3/M820.901781
5-3/M821.117411
6-2/M82N/AN/A
6-3/M821.061211
7-1/M821.03423
7-2/M820.91617
9-3-2/M821.184881

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.794380.321
IL2-6/WTpooled1.045991
IL7-5/WTpooled1.200240.792
IL7-3/WTpooled0.747790.31
IL12-4/WTpooled0.758690.581
IL1-4/WTpooled0.927811
WT/WTpooled0.963951

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.015821

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.943170.664
DC3000/delta hrp 6h0.929410.95
DC3000/delta hrp 12h1.007911
DC3000/delta hrp 24h1.036530.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.830420.365
DC3000 delta B/DC3000 delta AB0.869520.129

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.898731
Exp 36h1.701831
Exp 60h0.984530.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.953151
Var 0h1.067161
Var 12h I row2-row10.892770.338
Var 12h NI row2-row10.952480.906
Var 36h I row2-row11.026161
Var 36h NI row2-row11.108191
Var 60h I row2-row10.753860.285
Var 60h NI row2-row10.999921
Time course 0hI-0hNI0.97530.908
Time course 12hI-12hNI1.031610.756
Time course 36hI-36hNI1.03810.453
Time course 60hI-60hNI1.038571

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.465450.23
transgenic ySAMdc/azygous control (breaker)1.057881
transgenic ySAMdc/azygous control (red)1.015291

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.067180.063

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.891830.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.454260.172
Manapal/WT (break)1.036261
Manapal/WT (red)1.219921