Expression of 1-1-5.2.9.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78495 | 0.29 |
27DAP/17DAP | 0.86405 | 0.677 |
39DAP/27DAP | 1.66365 | 0.52 |
41DAP/39DAP | 1.79311 | 0.26 |
42DAP/41DAP | 0.94462 | 1 |
43DAP/42DAP | 0.79588 | 0.699 |
47DAP/43DAP | 0.6208 | 0.133 |
52DAP/47DAP | 2.30726 | 0.12 |
57DAP/52DAP | 0.87575 | 0.882 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70079 | 0.064 |
17DAP/reference | 0.75513 | 0.014 |
27DAP/reference | 0.75686 | 0.018 |
39DAP/reference | 0.81194 | 0.032 |
41DAP/reference | 0.88688 | 0.201 |
42DAP/reference | 0.95579 | 0.211 |
43DAP/reference | 0.89813 | 0.191 |
47DAP/reference | 0.79457 | 0.007 |
52DAP/reference | 0.9222 | 0.33 |
57DAP/reference | 1.03425 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94161 | 0.526 |
27DAP/17DAP | 1.07516 | 0.859 |
39DAP/27DAP | 1.05478 | 0.698 |
41DAP/39DAP | 1.12156 | 0.753 |
42DAP/41DAP | 1.00064 | 0.841 |
43DAP/42DAP | 1.01283 | 1 |
47DAP/43DAP | 1.08513 | 0.844 |
52DAP/47DAP | 1.00578 | 0.97 |
57DAP/52DAP | 0.97083 | 0.721 |
57DAP/7DAP | 1.25494 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76278 | 0.086 |
17DAP/reference | 0.75244 | 0.011 |
27DAP/reference | 0.87929 | 0.035 |
39DAP/reference | 0.76036 | 0.011 |
41DAP/reference | 0.74265 | 0.009 |
42DAP/reference | 0.76113 | 0.01 |
43DAP/reference | 0.75361 | 0.011 |
47DAP/reference | 0.63782 | 0.038 |
52DAP/reference | 0.71936 | 0.018 |
57DAP/reference | 0.72112 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.6877 | 0.01 |
17DAP/reference | 0.62279 | 0.004 |
27DAP/reference | 0.68497 | 0.018 |
39DAP/reference | 0.56611 | 0.008 |
41DAP/reference | 0.78028 | 0.04 |
42DAP/reference | 0.94672 | 0.392 |
43DAP/reference | 0.99655 | 0.748 |
47DAP/reference | 1.19063 | 0.049 |
52DAP/reference | 0.56708 | 0.003 |
57DAP/reference | 0.76247 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.69795 | 0.029 |
17DAP/reference | 0.81869 | 0.182 |
27DAP/reference | 0.68801 | 0.025 |
39DAP/reference | 0.73541 | 0.01 |
41DAP/reference | 0.7783 | 0.018 |
42DAP/reference | 0.88185 | 0.22 |
43DAP/reference | 0.68901 | 0.018 |
47DAP/reference | 0.58837 | 0.004 |
52DAP/reference | 0.69392 | 0.114 |
57DAP/reference | 0.6612 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0521 | 0.966 |
26DAP/20DAP | 0.8965 | 0.512 |
34DAP/26DAP | 1.09183 | 1 |
51DAP/34DAP | 0.918 | 0.419 |
52DAP/51DAP | 1.15865 | 0.446 |
53DAP/52DAP | 1.01566 | 0.998 |
55DAP/53DAP | 1.14465 | 0.28 |
57DAP/55DAP | 0.80612 | 0.21 |
62DAP/57DAP | 1.32221 | 0.115 |
68DAP/62DAP | 2.00042 | 0.616 |
68DAP/14DAP | 0.7624 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.09338 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.11095 | 0.437 |
Immature Eggplant/Mature Eggplant | 0.48002 | |
Ripe Pepper/Ripe Tomato | 0.52715 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.41936 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1019 | 0.877 |
1-1-2/M82 | 0.80696 | 0.958 |
12-2/M82 | 1.20878 | 1 |
12-4/M82 | 1.01789 | 1 |
1-3/M82 | 1.23515 | 1 |
2-1-1/M82 | 1.04236 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.94324 | 1 |
3-2/M82 | 1.03199 | 0.426 |
4-1-1/M82 | 0.94735 | 1 |
4-1/M82 | 0.68107 | 0.867 |
4-3-2/M82 | 0.85915 | 1 |
4-3/M82 | 0.87221 | 0.72 |
5-3/M82 | 1.10252 | 0.572 |
6-2/M82 | 0.9491 | 1 |
6-3/M82 | 0.96775 | 1 |
7-1/M82 | 0.91441 | 0.803 |
7-2/M82 | 0.94718 | 0.796 |
9-3-2/M82 | 0.96503 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.16333 | 0.277 |
IL2-6/WTpooled | 0.64316 | 0.473 |
IL7-5/WTpooled | 0.86137 | 1 |
IL7-3/WTpooled | 1.27368 | 1 |
IL12-4/WTpooled | 0.94508 | 0.71 |
IL1-4/WTpooled | 1.04211 | 1 |
WT/WTpooled | 0.95207 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03124 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99166 | 1 |
DC3000/delta hrp 6h | 1.06277 | |
DC3000/delta hrp 12h | 0.89829 | 1 |
DC3000/delta hrp 24h | 0.98731 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.85646 | 0.171 |
DC3000 delta B/DC3000 delta AB | 1.33453 | 0.198 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.32363 | 0.254 |
Exp 36h | 1.509 | 0.693 |
Exp 60h | 1.20225 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99829 | 1 |
Var 0h | 1.14747 | 0.98 |
Var 12h I row2-row1 | 1.04586 | 0.654 |
Var 12h NI row2-row1 | 1.36962 | 0.34 |
Var 36h I row2-row1 | 1.2815 | 0.908 |
Var 36h NI row2-row1 | 0.54557 | 0.45 |
Var 60h I row2-row1 | 0.84143 | |
Var 60h NI row2-row1 | 0.68084 | 0.313 |
Time course 0hI-0hNI | 1.11176 | 0.63 |
Time course 12hI-12hNI | 1.08064 | 0.816 |
Time course 36hI-36hNI | 2.24916 | 0.004 |
Time course 60hI-60hNI | 8.09569 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.23713 | 0.571 |
transgenic ySAMdc/azygous control (breaker) | 2.98584 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.81709 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00725 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02356 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.23332 | 1 |
Manapal/WT (break) | 0.94196 | 1 |
Manapal/WT (red) | 0.24557 | 0.181 |
|
|