Expression of 1-1-5.2.9.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.073690.847
27DAP/17DAP1.228590.842
39DAP/27DAP1.289640.974
41DAP/39DAP0.833880.516
42DAP/41DAP0.85971
43DAP/42DAP1.137621
47DAP/43DAP1.00890.959
52DAP/47DAP0.767110.466
57DAP/52DAP0.832850.55

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.143050.846
17DAP/reference1.13090.239
27DAP/reference1.00911
39DAP/reference1.113920.453
41DAP/reference1.022090.714
42DAP/reference0.802630.011
43DAP/reference1.024390.982
47DAP/reference0.839930.116
52DAP/reference0.944340.393
57DAP/reference0.752940.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.38490.547
27DAP/17DAP1.008711
39DAP/27DAP0.913520.35
41DAP/39DAP0.892770.434
42DAP/41DAP0.980730.77
43DAP/42DAP0.953240.729
47DAP/43DAP0.867620.254
52DAP/47DAP1.038420.933
57DAP/52DAP1.303090.251
57DAP/7DAP1.464950.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.063520.894
17DAP/reference1.390350.102
27DAP/reference1.452940.035
39DAP/reference1.022861
41DAP/reference1.029851
42DAP/reference0.997120.612
43DAP/reference1.406010.007
47DAP/reference1.087111
52DAP/reference1.149540.121
57DAP/reference1.305520.04

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.331080.12
17DAP/reference0.888410.245
27DAP/reference1.072120.834
39DAP/reference0.896810.156
41DAP/reference0.965640.422
42DAP/reference0.839690.061
43DAP/reference1.125540.598
47DAP/reference0.821040.02
52DAP/reference0.758720.004
57DAP/reference1.044230.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.506060.043
17DAP/reference1.126220.876
27DAP/reference1.737230.015
39DAP/reference1.417180.017
41DAP/reference1.342270.02
42DAP/reference1.234310.356
43DAP/reference1.080221
47DAP/reference0.793150.08
52DAP/reference1.666730.13
57DAP/reference0.880860.242

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.123481
26DAP/20DAP1.447150.541
34DAP/26DAP0.737250.404
51DAP/34DAP1.248270.261
52DAP/51DAP1.382850.163
53DAP/52DAP0.840790.231
55DAP/53DAP0.824270.417
57DAP/55DAP0.984440.88
62DAP/57DAP1.049920.935
68DAP/62DAP1.015921
68DAP/14DAP0.582970.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.771540.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.39534
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.73604
Mature Eggplant/Ripe Tomato0.90071

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.086911
1-1-2/M820.965951
12-2/M821.16015
12-4/M821.0714
1-3/M820.73764
2-1-1/M821.215650.764
2-1/M82N/AN/A
2-6/M820.999661
3-2/M82N/AN/A
4-1-1/M821.060580.966
4-1/M821.03673
4-3-2/M82N/AN/A
4-3/M820.991161
5-3/M821.011171
6-2/M821.43662
6-3/M821.214731
7-1/M82N/AN/A
7-2/M820.81595
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.962690.337
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.839420.31
IL12-4/WTpooled0.996631
IL1-4/WTpooled0.91257
WT/WTpooled1.032851

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.945791

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.994661
DC3000/delta hrp 6h1.081681
DC3000/delta hrp 12h1.117321
DC3000/delta hrp 24h1.272580.088

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.069691
Exp 36h1.513970.326
Exp 60h1.110230.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.050961
Var 0h1.011561
Var 12h I row2-row11.320420.19
Var 12h NI row2-row11.331640.649
Var 36h I row2-row11.055151
Var 36h NI row2-row10.889430.329
Var 60h I row2-row10.703080.285
Var 60h NI row2-row10.997771
Time course 0hI-0hNI1.035380.852
Time course 12hI-12hNI1.35340.168
Time course 36hI-36hNI1.197120.023
Time course 60hI-60hNI1.589350.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.003871
transgenic ySAMdc/azygous control (breaker)0.979171
transgenic ySAMdc/azygous control (red)1.046150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.178850.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.975351
Manapal/WT (break)1.069411
Manapal/WT (red)1.0411