Expression of 1-1-5.2.9.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07369 | 0.847 |
27DAP/17DAP | 1.22859 | 0.842 |
39DAP/27DAP | 1.28964 | 0.974 |
41DAP/39DAP | 0.83388 | 0.516 |
42DAP/41DAP | 0.8597 | 1 |
43DAP/42DAP | 1.13762 | 1 |
47DAP/43DAP | 1.0089 | 0.959 |
52DAP/47DAP | 0.76711 | 0.466 |
57DAP/52DAP | 0.83285 | 0.55 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14305 | 0.846 |
17DAP/reference | 1.1309 | 0.239 |
27DAP/reference | 1.0091 | 1 |
39DAP/reference | 1.11392 | 0.453 |
41DAP/reference | 1.02209 | 0.714 |
42DAP/reference | 0.80263 | 0.011 |
43DAP/reference | 1.02439 | 0.982 |
47DAP/reference | 0.83993 | 0.116 |
52DAP/reference | 0.94434 | 0.393 |
57DAP/reference | 0.75294 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.3849 | 0.547 |
27DAP/17DAP | 1.00871 | 1 |
39DAP/27DAP | 0.91352 | 0.35 |
41DAP/39DAP | 0.89277 | 0.434 |
42DAP/41DAP | 0.98073 | 0.77 |
43DAP/42DAP | 0.95324 | 0.729 |
47DAP/43DAP | 0.86762 | 0.254 |
52DAP/47DAP | 1.03842 | 0.933 |
57DAP/52DAP | 1.30309 | 0.251 |
57DAP/7DAP | 1.46495 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06352 | 0.894 |
17DAP/reference | 1.39035 | 0.102 |
27DAP/reference | 1.45294 | 0.035 |
39DAP/reference | 1.02286 | 1 |
41DAP/reference | 1.02985 | 1 |
42DAP/reference | 0.99712 | 0.612 |
43DAP/reference | 1.40601 | 0.007 |
47DAP/reference | 1.08711 | 1 |
52DAP/reference | 1.14954 | 0.121 |
57DAP/reference | 1.30552 | 0.04 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33108 | 0.12 |
17DAP/reference | 0.88841 | 0.245 |
27DAP/reference | 1.07212 | 0.834 |
39DAP/reference | 0.89681 | 0.156 |
41DAP/reference | 0.96564 | 0.422 |
42DAP/reference | 0.83969 | 0.061 |
43DAP/reference | 1.12554 | 0.598 |
47DAP/reference | 0.82104 | 0.02 |
52DAP/reference | 0.75872 | 0.004 |
57DAP/reference | 1.04423 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50606 | 0.043 |
17DAP/reference | 1.12622 | 0.876 |
27DAP/reference | 1.73723 | 0.015 |
39DAP/reference | 1.41718 | 0.017 |
41DAP/reference | 1.34227 | 0.02 |
42DAP/reference | 1.23431 | 0.356 |
43DAP/reference | 1.08022 | 1 |
47DAP/reference | 0.79315 | 0.08 |
52DAP/reference | 1.66673 | 0.13 |
57DAP/reference | 0.88086 | 0.242 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12348 | 1 |
26DAP/20DAP | 1.44715 | 0.541 |
34DAP/26DAP | 0.73725 | 0.404 |
51DAP/34DAP | 1.24827 | 0.261 |
52DAP/51DAP | 1.38285 | 0.163 |
53DAP/52DAP | 0.84079 | 0.231 |
55DAP/53DAP | 0.82427 | 0.417 |
57DAP/55DAP | 0.98444 | 0.88 |
62DAP/57DAP | 1.04992 | 0.935 |
68DAP/62DAP | 1.01592 | 1 |
68DAP/14DAP | 0.58297 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77154 | 0.122 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.39534 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.73604 | |
Mature Eggplant/Ripe Tomato | 0.90071 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08691 | 1 |
1-1-2/M82 | 0.96595 | 1 |
12-2/M82 | 1.16015 | |
12-4/M82 | 1.0714 | |
1-3/M82 | 0.73764 | |
2-1-1/M82 | 1.21565 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.99966 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.06058 | 0.966 |
4-1/M82 | 1.03673 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.99116 | 1 |
5-3/M82 | 1.01117 | 1 |
6-2/M82 | 1.43662 | |
6-3/M82 | 1.21473 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.81595 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.96269 | 0.337 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.83942 | 0.31 |
IL12-4/WTpooled | 0.99663 | 1 |
IL1-4/WTpooled | 0.91257 | |
WT/WTpooled | 1.03285 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94579 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99466 | 1 |
DC3000/delta hrp 6h | 1.08168 | 1 |
DC3000/delta hrp 12h | 1.11732 | 1 |
DC3000/delta hrp 24h | 1.27258 | 0.088 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06969 | 1 |
Exp 36h | 1.51397 | 0.326 |
Exp 60h | 1.11023 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05096 | 1 |
Var 0h | 1.01156 | 1 |
Var 12h I row2-row1 | 1.32042 | 0.19 |
Var 12h NI row2-row1 | 1.33164 | 0.649 |
Var 36h I row2-row1 | 1.05515 | 1 |
Var 36h NI row2-row1 | 0.88943 | 0.329 |
Var 60h I row2-row1 | 0.70308 | 0.285 |
Var 60h NI row2-row1 | 0.99777 | 1 |
Time course 0hI-0hNI | 1.03538 | 0.852 |
Time course 12hI-12hNI | 1.3534 | 0.168 |
Time course 36hI-36hNI | 1.19712 | 0.023 |
Time course 60hI-60hNI | 1.58935 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00387 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.97917 | 1 |
transgenic ySAMdc/azygous control (red) | 1.04615 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.17885 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.97535 | 1 |
Manapal/WT (break) | 1.06941 | 1 |
Manapal/WT (red) | 1.041 | 1 |
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