Expression of 1-1-5.2.9.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0138 | 0.977 |
27DAP/17DAP | 1.28923 | 0.699 |
39DAP/27DAP | 0.99399 | 0.782 |
41DAP/39DAP | 0.96367 | 0.802 |
42DAP/41DAP | 1.22422 | 0.709 |
43DAP/42DAP | 0.98051 | 0.925 |
47DAP/43DAP | 0.97152 | 0.868 |
52DAP/47DAP | 1.15167 | 0.895 |
57DAP/52DAP | 0.99092 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01586 | 0.76 |
17DAP/reference | 0.97629 | 0.503 |
27DAP/reference | 0.98562 | 0.668 |
39DAP/reference | 1.16048 | 0.534 |
41DAP/reference | 0.99235 | 0.814 |
42DAP/reference | 1.0119 | 1 |
43DAP/reference | 0.9973 | 0.904 |
47DAP/reference | 0.97579 | 0.366 |
52DAP/reference | 1.10435 | 0.096 |
57DAP/reference | 0.99965 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01716 | 0.826 |
27DAP/17DAP | 0.98779 | 0.782 |
39DAP/27DAP | 0.97394 | 0.66 |
41DAP/39DAP | 1.0115 | 0.896 |
42DAP/41DAP | 1.00524 | 1 |
43DAP/42DAP | 1.00712 | 0.788 |
47DAP/43DAP | 1.01042 | 0.934 |
52DAP/47DAP | 1.02636 | 0.9 |
57DAP/52DAP | 1.06144 | 0.596 |
57DAP/7DAP | 0.98843 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04349 | 0.65 |
17DAP/reference | 1.16536 | 0.064 |
27DAP/reference | 1.14702 | 0.009 |
39DAP/reference | 1.05433 | 0.865 |
41DAP/reference | 0.92834 | 0.449 |
42DAP/reference | 1.01311 | 1 |
43DAP/reference | 1 | 1 |
47DAP/reference | 0.97646 | 0.671 |
52DAP/reference | 0.94973 | 0.304 |
57DAP/reference | 1.02972 | 0.331 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98495 | 0.77 |
17DAP/reference | 1.0211 | 0.874 |
27DAP/reference | 1.07616 | 0.516 |
39DAP/reference | 1.01192 | 1 |
41DAP/reference | 1.05473 | 0.502 |
42DAP/reference | 0.97971 | 0.482 |
43DAP/reference | 1.18833 | 0.263 |
47DAP/reference | 0.96311 | 0.129 |
52DAP/reference | 1.00375 | 1 |
57DAP/reference | 0.9557 | 0.361 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9957 | 0.75 |
17DAP/reference | 1.03804 | 0.675 |
27DAP/reference | 1.1628 | 0.057 |
39DAP/reference | 1.25625 | 0.015 |
41DAP/reference | 1.08151 | 0.205 |
42DAP/reference | 1.02701 | 0.743 |
43DAP/reference | 1.05006 | 0.412 |
47DAP/reference | 1.01832 | 0.994 |
52DAP/reference | 1.03905 | 0.77 |
57DAP/reference | 1.04843 | 0.539 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02921 | 0.966 |
26DAP/20DAP | 0.96461 | 0.512 |
34DAP/26DAP | 0.96229 | 0.834 |
51DAP/34DAP | 1.00029 | 0.967 |
52DAP/51DAP | 0.98682 | 1 |
53DAP/52DAP | 0.98925 | 0.951 |
55DAP/53DAP | 1.03108 | 0.798 |
57DAP/55DAP | 0.96293 | 0.831 |
62DAP/57DAP | 1.05398 | 0.569 |
68DAP/62DAP | 1.22848 | 0.124 |
68DAP/14DAP | 1.4023 | 0.153 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.10321 | 0.081 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.53273 | |
Mature Green Tomato/Ripe Tomato | 0.88302 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.10012 | 0.606 |
Ripe Pepper/Ripe Tomato | 0.33522 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.70872 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0092 | 1 |
1-1-2/M82 | 1.10561 | 1 |
12-2/M82 | 0.96448 | 0.955 |
12-4/M82 | 1.04122 | 0.611 |
1-3/M82 | 0.96348 | 0.501 |
2-1-1/M82 | 0.97213 | 0.92 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.9451 | 1 |
3-2/M82 | 1.01251 | |
4-1-1/M82 | 1.02954 | 1 |
4-1/M82 | 0.91725 | |
4-3-2/M82 | 1.03413 | |
4-3/M82 | 0.95321 | 1 |
5-3/M82 | 1.08377 | 0.572 |
6-2/M82 | 1.00788 | 1 |
6-3/M82 | 1.02048 | 1 |
7-1/M82 | 1.07763 | 1 |
7-2/M82 | 0.93245 | 0.796 |
9-3-2/M82 | 0.89211 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.3874 | 0.277 |
IL2-6/WTpooled | 0.8938 | 1 |
IL7-5/WTpooled | 1.00982 | 1 |
IL7-3/WTpooled | 1.26824 | 1 |
IL12-4/WTpooled | 1.07224 | 0.673 |
IL1-4/WTpooled | 1.10956 | 1 |
WT/WTpooled | 0.93397 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98978 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08914 | 0.715 |
DC3000/delta hrp 6h | 1.01341 | 1 |
DC3000/delta hrp 12h | 0.97052 | 1 |
DC3000/delta hrp 24h | 1.0718 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.40709 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.25548 | 0.17 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95004 | 1 |
Exp 36h | 1.18112 | 0.693 |
Exp 60h | 1.1955 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98817 | 1 |
Var 0h | 1.06548 | 1 |
Var 12h I row2-row1 | 1.17307 | 0.235 |
Var 12h NI row2-row1 | 1.05638 | 1 |
Var 36h I row2-row1 | 0.89016 | 0.805 |
Var 36h NI row2-row1 | 0.95228 | 0.645 |
Var 60h I row2-row1 | 0.99272 | 1 |
Var 60h NI row2-row1 | 1.03545 | 1 |
Time course 0hI-0hNI | 1.04015 | 0.852 |
Time course 12hI-12hNI | 1.11128 | 0.083 |
Time course 36hI-36hNI | 1.1379 | 0.023 |
Time course 60hI-60hNI | 1.79122 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.47962 | 0.318 |
transgenic ySAMdc/azygous control (breaker) | 0.63819 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.27532 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00768 | 0.656 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.6617 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8145 | 1 |
Manapal/WT (break) | 0.73652 | 1 |
Manapal/WT (red) | 0.93845 | 0.607 |
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