Expression of 1-1-5.2.9.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.01380.977
27DAP/17DAP1.289230.699
39DAP/27DAP0.993990.782
41DAP/39DAP0.963670.802
42DAP/41DAP1.224220.709
43DAP/42DAP0.980510.925
47DAP/43DAP0.971520.868
52DAP/47DAP1.151670.895
57DAP/52DAP0.990920.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.015860.76
17DAP/reference0.976290.503
27DAP/reference0.985620.668
39DAP/reference1.160480.534
41DAP/reference0.992350.814
42DAP/reference1.01191
43DAP/reference0.99730.904
47DAP/reference0.975790.366
52DAP/reference1.104350.096
57DAP/reference0.999650.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.017160.826
27DAP/17DAP0.987790.782
39DAP/27DAP0.973940.66
41DAP/39DAP1.01150.896
42DAP/41DAP1.005241
43DAP/42DAP1.007120.788
47DAP/43DAP1.010420.934
52DAP/47DAP1.026360.9
57DAP/52DAP1.061440.596
57DAP/7DAP0.988431

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043490.65
17DAP/reference1.165360.064
27DAP/reference1.147020.009
39DAP/reference1.054330.865
41DAP/reference0.928340.449
42DAP/reference1.013111
43DAP/reference11
47DAP/reference0.976460.671
52DAP/reference0.949730.304
57DAP/reference1.029720.331

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.984950.77
17DAP/reference1.02110.874
27DAP/reference1.076160.516
39DAP/reference1.011921
41DAP/reference1.054730.502
42DAP/reference0.979710.482
43DAP/reference1.188330.263
47DAP/reference0.963110.129
52DAP/reference1.003751
57DAP/reference0.95570.361

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.99570.75
17DAP/reference1.038040.675
27DAP/reference1.16280.057
39DAP/reference1.256250.015
41DAP/reference1.081510.205
42DAP/reference1.027010.743
43DAP/reference1.050060.412
47DAP/reference1.018320.994
52DAP/reference1.039050.77
57DAP/reference1.048430.539

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.029210.966
26DAP/20DAP0.964610.512
34DAP/26DAP0.962290.834
51DAP/34DAP1.000290.967
52DAP/51DAP0.986821
53DAP/52DAP0.989250.951
55DAP/53DAP1.031080.798
57DAP/55DAP0.962930.831
62DAP/57DAP1.053980.569
68DAP/62DAP1.228480.124
68DAP/14DAP1.40230.153

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.103210.081

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.53273
Mature Green Tomato/Ripe Tomato0.883020.411
Immature Eggplant/Mature Eggplant1.100120.606
Ripe Pepper/Ripe Tomato0.335220.293
Mature Eggplant/Ripe Tomato0.708721

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.00921
1-1-2/M821.105611
12-2/M820.964480.955
12-4/M821.041220.611
1-3/M820.963480.501
2-1-1/M820.972130.92
2-1/M82N/AN/A
2-6/M820.94511
3-2/M821.01251
4-1-1/M821.029541
4-1/M820.91725
4-3-2/M821.03413
4-3/M820.953211
5-3/M821.083770.572
6-2/M821.007881
6-3/M821.020481
7-1/M821.077631
7-2/M820.932450.796
9-3-2/M820.89211

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.38740.277
IL2-6/WTpooled0.89381
IL7-5/WTpooled1.009821
IL7-3/WTpooled1.268241
IL12-4/WTpooled1.072240.673
IL1-4/WTpooled1.109561
WT/WTpooled0.933971

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.989781

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.089140.715
DC3000/delta hrp 6h1.013411
DC3000/delta hrp 12h0.970521
DC3000/delta hrp 24h1.07180.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.407090.042
DC3000 delta B/DC3000 delta AB1.255480.17

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.950041
Exp 36h1.181120.693
Exp 60h1.19550.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988171
Var 0h1.065481
Var 12h I row2-row11.173070.235
Var 12h NI row2-row11.056381
Var 36h I row2-row10.890160.805
Var 36h NI row2-row10.952280.645
Var 60h I row2-row10.992721
Var 60h NI row2-row11.035451
Time course 0hI-0hNI1.040150.852
Time course 12hI-12hNI1.111280.083
Time course 36hI-36hNI1.13790.023
Time course 60hI-60hNI1.791220.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.479620.318
transgenic ySAMdc/azygous control (breaker)0.638190.15
transgenic ySAMdc/azygous control (red)1.275320.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007680.656

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.66170.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.81451
Manapal/WT (break)0.736521
Manapal/WT (red)0.938450.607