Expression of 1-1-5.2.9.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031680.911
27DAP/17DAP0.807350.49
39DAP/27DAP1.050721
41DAP/39DAP0.806090.303
42DAP/41DAP0.986521
43DAP/42DAP0.953560.892
47DAP/43DAP1.053340.889
52DAP/47DAP1.292680.811
57DAP/52DAP1.029040.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.263230.162
17DAP/reference1.07620.178
27DAP/reference1.075670.365
39DAP/reference0.959490.36
41DAP/reference1.093560.079
42DAP/reference1.198850.001
43DAP/reference0.99760.924
47DAP/reference1.16170.006
52DAP/reference1.186750.096
57DAP/reference0.973410.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.168190.132
27DAP/17DAP0.842230.1
39DAP/27DAP0.744910.046
41DAP/39DAP1.196480.157
42DAP/41DAP0.845830.213
43DAP/42DAP1.301940.066
47DAP/43DAP1.091190.508
52DAP/47DAP1.058940.799
57DAP/52DAP1.313370.089
57DAP/7DAP0.965851

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.180720.117
17DAP/reference1.135970.014
27DAP/reference1.200110.049
39DAP/reference1.199730.007
41DAP/reference0.944230.298
42DAP/reference1.189440.132
43DAP/reference1.717280.006
47DAP/reference1.31560.152
52DAP/reference1.724140.007
57DAP/reference1.672840.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.242550.139
17DAP/reference1.230970.294
27DAP/reference1.341780.367
39DAP/reference1.39540.077
41DAP/reference1.326090.301
42DAP/reference1.320610.099
43DAP/reference1.30450.208
47DAP/reference1.102430.24
52DAP/reference1.209750.011
57DAP/reference1.092030.449

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.695040.017
17DAP/reference1.122140.563
27DAP/reference1.026140.903
39DAP/reference1.059790.483
41DAP/reference0.995030.754
42DAP/reference1.174930.106
43DAP/reference1.285170.042
47DAP/reference1.112610.14
52DAP/reference1.417980.118
57DAP/reference1.113190.452

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.914291
26DAP/20DAP1.087530.826
34DAP/26DAP0.951270.826
51DAP/34DAP0.778720.259
52DAP/51DAP1.199370.218
53DAP/52DAP0.939140.741
55DAP/53DAP1.041480.938
57DAP/55DAP1.142910.805
62DAP/57DAP1.181120.767
68DAP/62DAP0.621160.109
68DAP/14DAP0.769011

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.094350.285

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.605520.058
Mature Green Tomato/Ripe Tomato0.856780.377
Immature Eggplant/Mature Eggplant1.240950.067
Ripe Pepper/Ripe Tomato0.361530.224
Mature Eggplant/Ripe Tomato0.461061

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.075261
12-2/M82N/AN/A
12-4/M821.187781
1-3/M82N/AN/A
2-1-1/M820.974010.683
2-1/M82N/AN/A
2-6/M821.58768
3-2/M821.61115
4-1-1/M820.50074
4-1/M821.52404
4-3-2/M821.29052
4-3/M820.91948
5-3/M821.168181
6-2/M82N/AN/A
6-3/M820.56254
7-1/M820.68489
7-2/M82N/AN/A
9-3-2/M821.105411

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.010751
IL2-6/WTpooled0.778081
IL7-5/WTpooled0.84032
IL7-3/WTpooled1.157031
IL12-4/WTpooled1.127540.737
IL1-4/WTpooled1.521151
WT/WTpooled0.937251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.918760.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.93581
DC3000/delta hrp 6h1.104931
DC3000/delta hrp 12h1.311251
DC3000/delta hrp 24h1.031580.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.544030.028
DC3000 delta B/DC3000 delta AB0.420730.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.153241
Exp 36h1.243930.326
Exp 60h1.142450.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.982841
Var 0h0.415550.202
Var 12h I row2-row10.815360.338
Var 12h NI row2-row10.945430.488
Var 36h I row2-row10.896960.805
Var 36h NI row2-row11.098090.482
Var 60h I row2-row11.310970.562
Var 60h NI row2-row11.049181
Time course 0hI-0hNI1.017080.852
Time course 12hI-12hNI1.00350.888
Time course 36hI-36hNI1.001050.857
Time course 60hI-60hNI0.317050.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.822020.26
transgenic ySAMdc/azygous control (breaker)0.782660.15
transgenic ySAMdc/azygous control (red)1.069670.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.930990.059

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.006441

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.079051
Manapal/WT (break)1.111170.381
Manapal/WT (red)1.292070.142