Expression of 1-1-5.2.9.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03168 | 0.911 |
27DAP/17DAP | 0.80735 | 0.49 |
39DAP/27DAP | 1.05072 | 1 |
41DAP/39DAP | 0.80609 | 0.303 |
42DAP/41DAP | 0.98652 | 1 |
43DAP/42DAP | 0.95356 | 0.892 |
47DAP/43DAP | 1.05334 | 0.889 |
52DAP/47DAP | 1.29268 | 0.811 |
57DAP/52DAP | 1.02904 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26323 | 0.162 |
17DAP/reference | 1.0762 | 0.178 |
27DAP/reference | 1.07567 | 0.365 |
39DAP/reference | 0.95949 | 0.36 |
41DAP/reference | 1.09356 | 0.079 |
42DAP/reference | 1.19885 | 0.001 |
43DAP/reference | 0.9976 | 0.924 |
47DAP/reference | 1.1617 | 0.006 |
52DAP/reference | 1.18675 | 0.096 |
57DAP/reference | 0.97341 | 0.415 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16819 | 0.132 |
27DAP/17DAP | 0.84223 | 0.1 |
39DAP/27DAP | 0.74491 | 0.046 |
41DAP/39DAP | 1.19648 | 0.157 |
42DAP/41DAP | 0.84583 | 0.213 |
43DAP/42DAP | 1.30194 | 0.066 |
47DAP/43DAP | 1.09119 | 0.508 |
52DAP/47DAP | 1.05894 | 0.799 |
57DAP/52DAP | 1.31337 | 0.089 |
57DAP/7DAP | 0.96585 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18072 | 0.117 |
17DAP/reference | 1.13597 | 0.014 |
27DAP/reference | 1.20011 | 0.049 |
39DAP/reference | 1.19973 | 0.007 |
41DAP/reference | 0.94423 | 0.298 |
42DAP/reference | 1.18944 | 0.132 |
43DAP/reference | 1.71728 | 0.006 |
47DAP/reference | 1.3156 | 0.152 |
52DAP/reference | 1.72414 | 0.007 |
57DAP/reference | 1.67284 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24255 | 0.139 |
17DAP/reference | 1.23097 | 0.294 |
27DAP/reference | 1.34178 | 0.367 |
39DAP/reference | 1.3954 | 0.077 |
41DAP/reference | 1.32609 | 0.301 |
42DAP/reference | 1.32061 | 0.099 |
43DAP/reference | 1.3045 | 0.208 |
47DAP/reference | 1.10243 | 0.24 |
52DAP/reference | 1.20975 | 0.011 |
57DAP/reference | 1.09203 | 0.449 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.69504 | 0.017 |
17DAP/reference | 1.12214 | 0.563 |
27DAP/reference | 1.02614 | 0.903 |
39DAP/reference | 1.05979 | 0.483 |
41DAP/reference | 0.99503 | 0.754 |
42DAP/reference | 1.17493 | 0.106 |
43DAP/reference | 1.28517 | 0.042 |
47DAP/reference | 1.11261 | 0.14 |
52DAP/reference | 1.41798 | 0.118 |
57DAP/reference | 1.11319 | 0.452 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91429 | 1 |
26DAP/20DAP | 1.08753 | 0.826 |
34DAP/26DAP | 0.95127 | 0.826 |
51DAP/34DAP | 0.77872 | 0.259 |
52DAP/51DAP | 1.19937 | 0.218 |
53DAP/52DAP | 0.93914 | 0.741 |
55DAP/53DAP | 1.04148 | 0.938 |
57DAP/55DAP | 1.14291 | 0.805 |
62DAP/57DAP | 1.18112 | 0.767 |
68DAP/62DAP | 0.62116 | 0.109 |
68DAP/14DAP | 0.76901 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.09435 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.60552 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.85678 | 0.377 |
Immature Eggplant/Mature Eggplant | 1.24095 | 0.067 |
Ripe Pepper/Ripe Tomato | 0.36153 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.46106 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.07526 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.18778 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.97401 | 0.683 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.58768 | |
3-2/M82 | 1.61115 | |
4-1-1/M82 | 0.50074 | |
4-1/M82 | 1.52404 | |
4-3-2/M82 | 1.29052 | |
4-3/M82 | 0.91948 | |
5-3/M82 | 1.16818 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.56254 | |
7-1/M82 | 0.68489 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.10541 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01075 | 1 |
IL2-6/WTpooled | 0.77808 | 1 |
IL7-5/WTpooled | 0.84032 | |
IL7-3/WTpooled | 1.15703 | 1 |
IL12-4/WTpooled | 1.12754 | 0.737 |
IL1-4/WTpooled | 1.52115 | 1 |
WT/WTpooled | 0.93725 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91876 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9358 | 1 |
DC3000/delta hrp 6h | 1.10493 | 1 |
DC3000/delta hrp 12h | 1.31125 | 1 |
DC3000/delta hrp 24h | 1.03158 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.54403 | 0.028 |
DC3000 delta B/DC3000 delta AB | 0.42073 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15324 | 1 |
Exp 36h | 1.24393 | 0.326 |
Exp 60h | 1.14245 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98284 | 1 |
Var 0h | 0.41555 | 0.202 |
Var 12h I row2-row1 | 0.81536 | 0.338 |
Var 12h NI row2-row1 | 0.94543 | 0.488 |
Var 36h I row2-row1 | 0.89696 | 0.805 |
Var 36h NI row2-row1 | 1.09809 | 0.482 |
Var 60h I row2-row1 | 1.31097 | 0.562 |
Var 60h NI row2-row1 | 1.04918 | 1 |
Time course 0hI-0hNI | 1.01708 | 0.852 |
Time course 12hI-12hNI | 1.0035 | 0.888 |
Time course 36hI-36hNI | 1.00105 | 0.857 |
Time course 60hI-60hNI | 0.31705 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.82202 | 0.26 |
transgenic ySAMdc/azygous control (breaker) | 0.78266 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.06967 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93099 | 0.059 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.00644 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07905 | 1 |
Manapal/WT (break) | 1.11117 | 0.381 |
Manapal/WT (red) | 1.29207 | 0.142 |
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