Expression of 1-1-5.2.9.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11641 | 0.827 |
27DAP/17DAP | 0.46554 | 0.027 |
39DAP/27DAP | 0.59713 | 0.304 |
41DAP/39DAP | 0.64041 | 0.059 |
42DAP/41DAP | 0.84962 | 0.774 |
43DAP/42DAP | 1.23602 | 0.869 |
47DAP/43DAP | 0.7065 | 0.185 |
52DAP/47DAP | 0.87232 | 0.639 |
57DAP/52DAP | 1.15816 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.59994 | 0.015 |
17DAP/reference | 1.13081 | 0.148 |
27DAP/reference | 1.05077 | 0.794 |
39DAP/reference | 1.18374 | 0.027 |
41DAP/reference | 1.17442 | 0.026 |
42DAP/reference | 1.32506 | 0.002 |
43DAP/reference | 1.31743 | 0.011 |
47DAP/reference | 1.16951 | 0.264 |
52DAP/reference | 1.03761 | 1 |
57DAP/reference | 1.05326 | 0.564 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.63901 | 0.036 |
27DAP/17DAP | 0.88275 | 0.724 |
39DAP/27DAP | 0.38585 | 0.031 |
41DAP/39DAP | 1.29691 | 0.304 |
42DAP/41DAP | 0.96657 | 0.746 |
43DAP/42DAP | 0.51456 | 0.022 |
47DAP/43DAP | 0.78777 | 0.172 |
52DAP/47DAP | 0.84048 | 0.098 |
57DAP/52DAP | 0.99492 | 0.841 |
57DAP/7DAP | 0.23011 | 0.143 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38016 | 0.038 |
17DAP/reference | 1.12722 | 0.297 |
27DAP/reference | 1.50589 | 0.007 |
39DAP/reference | 1.26212 | 0.046 |
41DAP/reference | 1.36676 | 0.029 |
42DAP/reference | 1.41268 | 0.007 |
43DAP/reference | 1.4567 | 0.008 |
47DAP/reference | 1.14262 | 0.377 |
52DAP/reference | 1.37286 | 0.043 |
57DAP/reference | 1.26915 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.46565 | 0.463 |
17DAP/reference | 1.7391 | 0.007 |
27DAP/reference | 1.36139 | 0.095 |
39DAP/reference | 1.39534 | 0.031 |
41DAP/reference | 1.45002 | 0.007 |
42DAP/reference | 1.45038 | 0.011 |
43DAP/reference | 1.35616 | 0.205 |
47DAP/reference | 1.3457 | 0.008 |
52DAP/reference | 1.20096 | 0.057 |
57DAP/reference | 1.22394 | 0.423 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53213 | 0.015 |
17DAP/reference | 1.12356 | 0.503 |
27DAP/reference | 1.25437 | 0.048 |
39DAP/reference | 1.17749 | 0.038 |
41DAP/reference | 1.23582 | 0.058 |
42DAP/reference | 1.18698 | 0.057 |
43DAP/reference | 1.43259 | 0.033 |
47DAP/reference | 1.09458 | 0.443 |
52DAP/reference | 1.26872 | 0.155 |
57DAP/reference | 1.11141 | 0.604 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.63345 | 0.807 |
26DAP/20DAP | 1.00577 | 1 |
34DAP/26DAP | 0.83527 | 0.301 |
51DAP/34DAP | 0.89834 | 0.571 |
52DAP/51DAP | 1.01018 | 0.954 |
53DAP/52DAP | 0.81868 | 0.311 |
55DAP/53DAP | 1.22181 | 0.547 |
57DAP/55DAP | 1.04625 | 0.997 |
62DAP/57DAP | 0.858 | 0.681 |
68DAP/62DAP | 0.94768 | 0.787 |
68DAP/14DAP | 0.80917 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.69216 | 0.023 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.17526 | 0.089 |
Mature Green Tomato/Ripe Tomato | 11.1603 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.90794 | 0.72 |
Ripe Pepper/Ripe Tomato | 1.27005 | 1 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.22864 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.2835 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.81196 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.97008 | 1 |
IL12-4/WTpooled | 0.90466 | 0.71 |
IL1-4/WTpooled | 0.88194 | 0.415 |
WT/WTpooled | 0.92027 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95879 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.08081 | 1 |
DC3000/delta hrp 12h | 1.09481 | 1 |
DC3000/delta hrp 24h | 1.42231 | 0.099 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.65199 | 0.026 |
DC3000 delta B/DC3000 delta AB | 0.47855 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17327 | 1 |
Exp 36h | 1.28911 | 0.693 |
Exp 60h | 1.35185 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00024 | 1 |
Var 0h | 1.10117 | 0.782 |
Var 12h I row2-row1 | 0.94479 | 0.338 |
Var 12h NI row2-row1 | 0.94058 | 0.36 |
Var 36h I row2-row1 | 1.06215 | 1 |
Var 36h NI row2-row1 | 0.9723 | 0.706 |
Var 60h I row2-row1 | 1.11739 | 0.562 |
Var 60h NI row2-row1 | 1.02053 | 1 |
Time course 0hI-0hNI | 0.99906 | 1 |
Time course 12hI-12hNI | 0.99064 | 0.931 |
Time course 36hI-36hNI | 1.01047 | 0.975 |
Time course 60hI-60hNI | 0.68393 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90648 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.80606 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.04658 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0438 | 0.247 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77575 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.87329 | 0.172 |
Manapal/WT (break) | 1.25272 | 0.381 |
Manapal/WT (red) | 1.134 | 0.142 |
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