Expression of 1-1-5.3.1.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.41903 | 0.018 |
27DAP/17DAP | 0.65482 | 0.29 |
39DAP/27DAP | 1.12939 | 1 |
41DAP/39DAP | 0.96941 | 0.879 |
42DAP/41DAP | 2.17439 | 0.619 |
43DAP/42DAP | 1.0422 | 0.94 |
47DAP/43DAP | 0.96068 | 0.693 |
52DAP/47DAP | 1.43061 | 0.994 |
57DAP/52DAP | 0.91617 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0994 | 0.814 |
17DAP/reference | 1.11887 | 0.047 |
27DAP/reference | 0.93175 | 0.187 |
39DAP/reference | 0.97036 | 0.487 |
41DAP/reference | 0.96826 | 0.667 |
42DAP/reference | 0.92521 | 0.085 |
43DAP/reference | 0.98362 | 0.708 |
47DAP/reference | 0.90569 | 0.035 |
52DAP/reference | 0.86878 | 0.121 |
57DAP/reference | 0.84684 | 0.074 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20039 | 0.947 |
27DAP/17DAP | 1.34397 | 0.262 |
39DAP/27DAP | 0.74258 | 0.037 |
41DAP/39DAP | 1.18232 | 0.861 |
42DAP/41DAP | 0.76489 | 0.093 |
43DAP/42DAP | 1.14606 | 0.513 |
47DAP/43DAP | 0.98385 | 0.961 |
52DAP/47DAP | 1.30851 | 0.66 |
57DAP/52DAP | 1.21748 | 0.978 |
57DAP/7DAP | 0.97407 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9555 | 0.326 |
17DAP/reference | 1.09049 | 0.269 |
27DAP/reference | 1.06514 | 1 |
39DAP/reference | 0.95542 | 0.474 |
41DAP/reference | 0.91782 | 0.469 |
42DAP/reference | 1.04687 | 1 |
43DAP/reference | 1.16335 | 0.483 |
47DAP/reference | 0.9443 | 0.504 |
52DAP/reference | 0.85152 | 0.035 |
57DAP/reference | 0.9605 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19298 | 0.265 |
17DAP/reference | 1.06232 | 0.723 |
27DAP/reference | 0.90862 | 0.129 |
39DAP/reference | 0.94039 | 0.257 |
41DAP/reference | 0.92621 | 0.137 |
42DAP/reference | 0.74632 | 0.018 |
43DAP/reference | 0.96751 | 0.507 |
47DAP/reference | 0.89246 | 0.087 |
52DAP/reference | 0.93133 | 0.131 |
57DAP/reference | 1.01565 | 0.834 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1231 | 0.237 |
17DAP/reference | 1.10941 | 0.371 |
27DAP/reference | 1.27737 | 0.025 |
39DAP/reference | 0.94206 | 0.299 |
41DAP/reference | 1.04 | 1 |
42DAP/reference | 0.7773 | 0.087 |
43DAP/reference | 0.80752 | 0.15 |
47DAP/reference | 1.0008 | 0.687 |
52DAP/reference | 0.93072 | 0.327 |
57DAP/reference | 0.78028 | 0.022 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12699 | 0.966 |
26DAP/20DAP | 1.09888 | 1 |
34DAP/26DAP | 1.23958 | 0.819 |
51DAP/34DAP | 1.28972 | 0.535 |
52DAP/51DAP | 1.31407 | 0.708 |
53DAP/52DAP | 0.93211 | |
55DAP/53DAP | 1.35658 | 0.341 |
57DAP/55DAP | 1.16639 | 0.793 |
62DAP/57DAP | 1.33872 | 0.445 |
68DAP/62DAP | 1.08151 | 0.85 |
68DAP/14DAP | 0.78177 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79553 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.19718 | 0.089 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 3.5658 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.18617 | |
Mature Eggplant/Ripe Tomato | 35.6609 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.92084 | |
12-2/M82 | 0.7278 | |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.70105 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.47695 | 0.243 |
IL2-6/WTpooled | 1.12567 | 0.659 |
IL7-5/WTpooled | 0.66718 | 1 |
IL7-3/WTpooled | 0.36374 | 0.294 |
IL12-4/WTpooled | 0.82557 | 1 |
IL1-4/WTpooled | 0.74151 | 0.457 |
WT/WTpooled | 1.03073 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82963 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94822 | 1 |
DC3000/delta hrp 6h | 0.95654 | 0.95 |
DC3000/delta hrp 12h | 0.79682 | 1 |
DC3000/delta hrp 24h | 7.87819 | 0.022 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.76983 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.6886 | 0.069 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8366 | 1 |
Exp 36h | 1.65647 | 0.693 |
Exp 60h | 2.07808 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02271 | 1 |
Var 0h | 0.46674 | 0.457 |
Var 12h I row2-row1 | 0.7593 | 0.39 |
Var 12h NI row2-row1 | 1.07899 | 0.649 |
Var 36h I row2-row1 | 0.91837 | 1 |
Var 36h NI row2-row1 | 1.10225 | 1 |
Var 60h I row2-row1 | 0.93064 | 0.832 |
Var 60h NI row2-row1 | 0.97168 | 1 |
Time course 0hI-0hNI | 1.0025 | 1 |
Time course 12hI-12hNI | 0.8501 | 0.05 |
Time course 36hI-36hNI | 0.8486 | 0.023 |
Time course 60hI-60hNI | 0.76889 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04711 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.43603 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.16093 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0112 | 0.556 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.39204 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89911 | 1 |
Manapal/WT (break) | 1.26559 | 0.381 |
Manapal/WT (red) | 0.95127 | 0.728 |
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