Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.3.1.17

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.77465	0.389
27DAP/17DAP	1.29837	0.801
39DAP/27DAP	0.94228	0.67
41DAP/39DAP	1.29663	0.32
42DAP/41DAP	1.27731	0.868
43DAP/42DAP	1.78659	0.512
47DAP/43DAP	1.09012	0.889
52DAP/47DAP	0.98041	0.587
57DAP/52DAP	1.37045	0.886

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96642	0.465
17DAP/reference	1.08636	0.132
27DAP/reference	1.02016	0.648
39DAP/reference	0.98155	0.704
41DAP/reference	1.12313	0.516
42DAP/reference	0.88409	0.021
43DAP/reference	1.0728	0.252
47DAP/reference	0.87201	0.005
52DAP/reference	0.83488	0.195
57DAP/reference	0.66232	0.031

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.99993	0.763
27DAP/17DAP	1.01043	1
39DAP/27DAP	0.99711	1
41DAP/39DAP	1.00801	1
42DAP/41DAP	0.90951	0.404
43DAP/42DAP	1.13571	0.324
47DAP/43DAP	1.04573	0.765
52DAP/47DAP	1.06877	0.789
57DAP/52DAP	1.06998	0.65
57DAP/7DAP	1.56186	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94047	0.326
17DAP/reference	0.88663	0.015
27DAP/reference	1.04232	0.551
39DAP/reference	0.92983	0.095
41DAP/reference	1.03226	0.891
42DAP/reference	1.20206	0.132
43DAP/reference	1.05645	0.83
47DAP/reference	0.86094	0.05
52DAP/reference	0.97043	0.435
57DAP/reference	1.0438	1

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.14558	0.238
17DAP/reference	0.96196	0.474
27DAP/reference	0.76872	0.064
39DAP/reference	0.74027	0.097
41DAP/reference	0.8651	0.031
42DAP/reference	0.84137	0.042
43DAP/reference	0.99641	0.787
47DAP/reference	0.80606	0.013
52DAP/reference	0.90732	0.111
57DAP/reference	1.07435	0.887

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05855	1
17DAP/reference	1.04618	0.804
27DAP/reference	0.90507	0.038
39DAP/reference	0.93347	0.246
41DAP/reference	1.05077	1
42DAP/reference	0.92247	0.445
43DAP/reference	0.69832	0.048
47DAP/reference	0.94828	0.421
52DAP/reference	0.83511	0.163
57DAP/reference	0.53431	0.016

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.14255	0.966
26DAP/20DAP	0.89516	1
34DAP/26DAP	0.80242	0.356
51DAP/34DAP	0.99932	0.893
52DAP/51DAP	1.07388	0.904
53DAP/52DAP	0.94127	0.772
55DAP/53DAP	1.13249	0.534
57DAP/55DAP	1.00489	1
62DAP/57DAP	1.21639	0.047
68DAP/62DAP	0.81501	0.049
68DAP/14DAP	0.92506	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.74518	0.032

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.69975	0.203
Mature Green Tomato/Ripe Tomato	0.82606
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	1.49268	0.258
Mature Eggplant/Ripe Tomato	0.53204	0.234

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.19396
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	0.81384
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.2228	0.493
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	1.84575
IL7-3/WTpooled	1.4929
IL12-4/WTpooled	1.26342	0.646
IL1-4/WTpooled	1.52962	1
WT/WTpooled	1.03221	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.80335

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.86456	0.868
DC3000/delta hrp 6h	0.86983	0.95
DC3000/delta hrp 12h	1.16327	1
DC3000/delta hrp 24h	1.09986	0.779

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	2.81551
DC3000 delta B/DC3000 delta AB	0.86822	0.543

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.13818	0.254
Exp 36h	0.84506	0.749
Exp 60h	0.75875	0.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.08582	1
Var 0h	1.02356	1
Var 12h I row2-row1	1.15547	0.443
Var 12h NI row2-row1	1.1301	1
Var 36h I row2-row1	0.85715	0.805
Var 36h NI row2-row1	0.92724	0.28
Var 60h I row2-row1	1.1591
Var 60h NI row2-row1	1.01357	1
Time course 0hI-0hNI	1.28613	0.764
Time course 12hI-12hNI	0.9626	0.752
Time course 36hI-36hNI	0.9295	0.284
Time course 60hI-60hNI	0.94806	0.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.09037	0.541
transgenic ySAMdc/azygous control (breaker)	0.77453	0.142
transgenic ySAMdc/azygous control (red)	1.01235	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.98794	0.568

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.05534	0.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.52297	0.083
Manapal/WT (break)	1.22802	0.183
Manapal/WT (red)	1.13813	0.222