Expression of 1-1-5.3.10.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0371 | 0.912 |
27DAP/17DAP | 0.93697 | 0.863 |
39DAP/27DAP | 0.69822 | 0.39 |
41DAP/39DAP | 1.21168 | 0.63 |
42DAP/41DAP | 1.06043 | 1 |
43DAP/42DAP | 0.9559 | 0.888 |
47DAP/43DAP | 0.94658 | 0.799 |
52DAP/47DAP | 1.57001 | 0.298 |
57DAP/52DAP | 0.8199 | 0.622 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97092 | 0.455 |
17DAP/reference | 1.0189 | 0.696 |
27DAP/reference | 0.97626 | 0.484 |
39DAP/reference | 1.02357 | 0.368 |
41DAP/reference | 0.96273 | 0.667 |
42DAP/reference | 0.92451 | 0.024 |
43DAP/reference | 0.9942 | 0.84 |
47DAP/reference | 0.89687 | 0.009 |
52DAP/reference | 0.98658 | 0.636 |
57DAP/reference | 0.9189 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93451 | 0.496 |
27DAP/17DAP | 0.99992 | 0.969 |
39DAP/27DAP | 1.13905 | 0.441 |
41DAP/39DAP | 1.0293 | 1 |
42DAP/41DAP | 1.09908 | 0.687 |
43DAP/42DAP | 0.98562 | 0.875 |
47DAP/43DAP | 0.9726 | 0.886 |
52DAP/47DAP | 0.91812 | 0.726 |
57DAP/52DAP | 1.0665 | 0.657 |
57DAP/7DAP | 1.0108 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92062 | 0.224 |
17DAP/reference | 0.89133 | 0.018 |
27DAP/reference | 0.85816 | 0.01 |
39DAP/reference | 0.8657 | 0.013 |
41DAP/reference | 0.83061 | 0.015 |
42DAP/reference | 0.81933 | 0.014 |
43DAP/reference | 0.83633 | 0.027 |
47DAP/reference | 0.82989 | 0.034 |
52DAP/reference | 0.76522 | 0.024 |
57DAP/reference | 0.80701 | 0.03 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02381 | 0.66 |
17DAP/reference | 1.03251 | 0.584 |
27DAP/reference | 0.86236 | 0.108 |
39DAP/reference | 0.90976 | 0.129 |
41DAP/reference | 0.86392 | 0.049 |
42DAP/reference | 0.92567 | 0.135 |
43DAP/reference | 1.08373 | 0.386 |
47DAP/reference | 0.93391 | 0.087 |
52DAP/reference | 1.05268 | 0.259 |
57DAP/reference | 1.07762 | 0.672 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99654 | 0.804 |
17DAP/reference | 0.93487 | 0.335 |
27DAP/reference | 0.87624 | 0.036 |
39DAP/reference | 0.84713 | 0.025 |
41DAP/reference | 0.86108 | 0.031 |
42DAP/reference | 0.81398 | 0.02 |
43DAP/reference | 0.79154 | 0.066 |
47DAP/reference | 0.98984 | 0.61 |
52DAP/reference | 0.83531 | 0.189 |
57DAP/reference | 0.62959 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99727 | 1 |
26DAP/20DAP | 0.9953 | 1 |
34DAP/26DAP | 1.06546 | 1 |
51DAP/34DAP | 0.93788 | 0.618 |
52DAP/51DAP | 1.03731 | 0.662 |
53DAP/52DAP | 1.07346 | 0.783 |
55DAP/53DAP | 1.08919 | 0.622 |
57DAP/55DAP | 0.90831 | 0.539 |
62DAP/57DAP | 1.13704 | 0.303 |
68DAP/62DAP | 1.09631 | 0.878 |
68DAP/14DAP | 1.40198 | 0.714 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93944 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.11015 | 0.055 |
Mature Green Tomato/Ripe Tomato | 0.80741 | 0.2 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 14.841 | 1 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94867 | 0.944 |
1-1-2/M82 | 0.81156 | 0.804 |
12-2/M82 | 1.03521 | 1 |
12-4/M82 | 0.99567 | 1 |
1-3/M82 | 0.70476 | 0.376 |
2-1-1/M82 | 1.25099 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.99583 | 1 |
3-2/M82 | 0.95289 | |
4-1-1/M82 | 0.98827 | 1 |
4-1/M82 | 0.91574 | 1 |
4-3-2/M82 | 1.01669 | |
4-3/M82 | 0.85065 | 1 |
5-3/M82 | 1.07235 | |
6-2/M82 | 0.89766 | 0.497 |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.8009 | |
7-2/M82 | 1.09454 | 1 |
9-3-2/M82 | 0.75144 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.13983 | 1 |
IL2-6/WTpooled | 1.05425 | 0.659 |
IL7-5/WTpooled | 0.80745 | 1 |
IL7-3/WTpooled | 1.08265 | 1 |
IL12-4/WTpooled | 0.88546 | 0.71 |
IL1-4/WTpooled | 0.94375 | 0.834 |
WT/WTpooled | 0.86779 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.79725 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07767 | 0.875 |
DC3000/delta hrp 6h | 0.95075 | 0.95 |
DC3000/delta hrp 12h | 1.16043 | 1 |
DC3000/delta hrp 24h | 0.9916 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04544 | 0.648 |
DC3000 delta B/DC3000 delta AB | 0.94655 | 0.223 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.04018 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99757 | 1 |
Var 0h | 0.51312 | 0.421 |
Var 12h I row2-row1 | 0.98117 | 0.948 |
Var 12h NI row2-row1 | 0.91291 | 0.627 |
Var 36h I row2-row1 | 0.78828 | 0.805 |
Var 36h NI row2-row1 | 1.05325 | 0.482 |
Var 60h I row2-row1 | 1.29391 | 0.562 |
Var 60h NI row2-row1 | 1.16516 | 0.904 |
Time course 0hI-0hNI | 1.07052 | 0.719 |
Time course 12hI-12hNI | 1.04802 | 0.668 |
Time course 36hI-36hNI | 0.88211 | 0.187 |
Time course 60hI-60hNI | 0.87128 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.26266 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.19634 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.71724 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99035 | 0.534 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82408 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.1953 | 1 |
Manapal/WT (break) | 1.45111 | 0.14 |
Manapal/WT (red) | N/A | N/A |
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