Expression of 1-1-5.3.10.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.996170.867
27DAP/17DAP1.181340.873
39DAP/27DAP1.138470.825
41DAP/39DAP1.045150.949
42DAP/41DAP1.142650.886
43DAP/42DAP1.011730.937
47DAP/43DAP1.180580.463
52DAP/47DAP1.179680.709
57DAP/52DAP1.085890.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.306960.045
17DAP/reference1.093380.086
27DAP/reference1.114530.314
39DAP/reference1.122220.243
41DAP/reference1.319350.067
42DAP/reference1.184850.003
43DAP/reference1.004941
47DAP/reference1.051660.223
52DAP/reference1.048730.576
57DAP/reference0.917630.165

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.150450.708
27DAP/17DAP0.918010.508
39DAP/27DAP1.052840.46
41DAP/39DAP0.944690.861
42DAP/41DAP1.105290.74
43DAP/42DAP1.133560.382
47DAP/43DAP0.982140.902
52DAP/47DAP1.010750.979
57DAP/52DAP0.889910.354
57DAP/7DAP1.084191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.079850.036
17DAP/reference3.51260.006
27DAP/reference4.260440.006
39DAP/reference4.947510.005
41DAP/reference4.991850.01
42DAP/reference5.643280.006
43DAP/reference7.647580.006
47DAP/reference2.223450.247
52DAP/reference5.179060.007
57DAP/reference3.29510.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.541810.12
17DAP/reference1.569470.007
27DAP/reference1.463030.05
39DAP/reference1.440450.036
41DAP/reference1.46130.026
42DAP/reference1.251410.038
43DAP/reference1.416240.327
47DAP/reference1.127010.042
52DAP/reference1.280660.019
57DAP/reference1.495810.01

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.133470.019
17DAP/reference2.25730.05
27DAP/reference3.460720.019
39DAP/reference3.529250.011
41DAP/reference3.675790.008
42DAP/reference4.280820.007
43DAP/reference3.301450.022
47DAP/reference1.141990.388
52DAP/reference2.775630.091
57DAP/reference1.943340.47

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.188390.966
26DAP/20DAP1.26250.285
34DAP/26DAP1.056551
51DAP/34DAP1.065960.978
52DAP/51DAP0.921751
53DAP/52DAP1.042151
55DAP/53DAP1.043080.894
57DAP/55DAP1.146440.898
62DAP/57DAP0.996330.994
68DAP/62DAP0.679510.29
68DAP/14DAP0.636990.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.543670.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.092371
Mature Green Tomato/Ripe Tomato1.144150.577
Immature Eggplant/Mature Eggplant0.809080.651
Ripe Pepper/Ripe Tomato1.7846
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.085321
1-3/M82N/AN/A
2-1-1/M820.90909
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.28373
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.13229

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.70368
IL2-6/WTpooled1.596640.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.131861
IL12-4/WTpooled0.882460.71
IL1-4/WTpooled1.112071
WT/WTpooled0.977511

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.879530.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.94911
DC3000/delta hrp 6h1.127131
DC3000/delta hrp 12h1.248531
DC3000/delta hrp 24h0.523980.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.89260.538
DC3000 delta B/DC3000 delta AB0.702610.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.080591
Exp 36h0.641880.406
Exp 60h0.72750.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.006561
Var 0h1.040220.936
Var 12h I row2-row10.752820.357
Var 12h NI row2-row11.009271
Var 36h I row2-row10.864450.805
Var 36h NI row2-row11.134610.482
Var 60h I row2-row10.841050.293
Var 60h NI row2-row11.052790.904
Time course 0hI-0hNI1.020920.852
Time course 12hI-12hNI0.921470.248
Time course 36hI-36hNI0.970830.504
Time course 60hI-60hNI0.378870.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.980840.722
transgenic ySAMdc/azygous control (breaker)1.138770.248
transgenic ySAMdc/azygous control (red)0.950341

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.943850.133

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.466320.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.873980.087
Manapal/WT (break)1.814350.13
Manapal/WT (red)N/AN/A