Expression of 1-1-5.3.10.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99617 | 0.867 |
27DAP/17DAP | 1.18134 | 0.873 |
39DAP/27DAP | 1.13847 | 0.825 |
41DAP/39DAP | 1.04515 | 0.949 |
42DAP/41DAP | 1.14265 | 0.886 |
43DAP/42DAP | 1.01173 | 0.937 |
47DAP/43DAP | 1.18058 | 0.463 |
52DAP/47DAP | 1.17968 | 0.709 |
57DAP/52DAP | 1.08589 | 0.964 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30696 | 0.045 |
17DAP/reference | 1.09338 | 0.086 |
27DAP/reference | 1.11453 | 0.314 |
39DAP/reference | 1.12222 | 0.243 |
41DAP/reference | 1.31935 | 0.067 |
42DAP/reference | 1.18485 | 0.003 |
43DAP/reference | 1.00494 | 1 |
47DAP/reference | 1.05166 | 0.223 |
52DAP/reference | 1.04873 | 0.576 |
57DAP/reference | 0.91763 | 0.165 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15045 | 0.708 |
27DAP/17DAP | 0.91801 | 0.508 |
39DAP/27DAP | 1.05284 | 0.46 |
41DAP/39DAP | 0.94469 | 0.861 |
42DAP/41DAP | 1.10529 | 0.74 |
43DAP/42DAP | 1.13356 | 0.382 |
47DAP/43DAP | 0.98214 | 0.902 |
52DAP/47DAP | 1.01075 | 0.979 |
57DAP/52DAP | 0.88991 | 0.354 |
57DAP/7DAP | 1.08419 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.07985 | 0.036 |
17DAP/reference | 3.5126 | 0.006 |
27DAP/reference | 4.26044 | 0.006 |
39DAP/reference | 4.94751 | 0.005 |
41DAP/reference | 4.99185 | 0.01 |
42DAP/reference | 5.64328 | 0.006 |
43DAP/reference | 7.64758 | 0.006 |
47DAP/reference | 2.22345 | 0.247 |
52DAP/reference | 5.17906 | 0.007 |
57DAP/reference | 3.2951 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54181 | 0.12 |
17DAP/reference | 1.56947 | 0.007 |
27DAP/reference | 1.46303 | 0.05 |
39DAP/reference | 1.44045 | 0.036 |
41DAP/reference | 1.4613 | 0.026 |
42DAP/reference | 1.25141 | 0.038 |
43DAP/reference | 1.41624 | 0.327 |
47DAP/reference | 1.12701 | 0.042 |
52DAP/reference | 1.28066 | 0.019 |
57DAP/reference | 1.49581 | 0.01 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.13347 | 0.019 |
17DAP/reference | 2.2573 | 0.05 |
27DAP/reference | 3.46072 | 0.019 |
39DAP/reference | 3.52925 | 0.011 |
41DAP/reference | 3.67579 | 0.008 |
42DAP/reference | 4.28082 | 0.007 |
43DAP/reference | 3.30145 | 0.022 |
47DAP/reference | 1.14199 | 0.388 |
52DAP/reference | 2.77563 | 0.091 |
57DAP/reference | 1.94334 | 0.47 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.18839 | 0.966 |
26DAP/20DAP | 1.2625 | 0.285 |
34DAP/26DAP | 1.05655 | 1 |
51DAP/34DAP | 1.06596 | 0.978 |
52DAP/51DAP | 0.92175 | 1 |
53DAP/52DAP | 1.04215 | 1 |
55DAP/53DAP | 1.04308 | 0.894 |
57DAP/55DAP | 1.14644 | 0.898 |
62DAP/57DAP | 0.99633 | 0.994 |
68DAP/62DAP | 0.67951 | 0.29 |
68DAP/14DAP | 0.63699 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.54367 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.09237 | 1 |
Mature Green Tomato/Ripe Tomato | 1.14415 | 0.577 |
Immature Eggplant/Mature Eggplant | 0.80908 | 0.651 |
Ripe Pepper/Ripe Tomato | 1.7846 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.08532 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.90909 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.28373 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.13229 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.70368 | |
IL2-6/WTpooled | 1.59664 | 0.531 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.13186 | 1 |
IL12-4/WTpooled | 0.88246 | 0.71 |
IL1-4/WTpooled | 1.11207 | 1 |
WT/WTpooled | 0.97751 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87953 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9491 | 1 |
DC3000/delta hrp 6h | 1.12713 | 1 |
DC3000/delta hrp 12h | 1.24853 | 1 |
DC3000/delta hrp 24h | 0.52398 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.8926 | 0.538 |
DC3000 delta B/DC3000 delta AB | 0.70261 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08059 | 1 |
Exp 36h | 0.64188 | 0.406 |
Exp 60h | 0.7275 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00656 | 1 |
Var 0h | 1.04022 | 0.936 |
Var 12h I row2-row1 | 0.75282 | 0.357 |
Var 12h NI row2-row1 | 1.00927 | 1 |
Var 36h I row2-row1 | 0.86445 | 0.805 |
Var 36h NI row2-row1 | 1.13461 | 0.482 |
Var 60h I row2-row1 | 0.84105 | 0.293 |
Var 60h NI row2-row1 | 1.05279 | 0.904 |
Time course 0hI-0hNI | 1.02092 | 0.852 |
Time course 12hI-12hNI | 0.92147 | 0.248 |
Time course 36hI-36hNI | 0.97083 | 0.504 |
Time course 60hI-60hNI | 0.37887 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98084 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.13877 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.95034 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94385 | 0.133 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.46632 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.87398 | 0.087 |
Manapal/WT (break) | 1.81435 | 0.13 |
Manapal/WT (red) | N/A | N/A |
|
|