Expression of 1-1-5.3.10.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.809720.238
27DAP/17DAP0.922240.833
39DAP/27DAP1.022780.798
41DAP/39DAP0.72480.103
42DAP/41DAP0.954371
43DAP/42DAP1.145040.867
47DAP/43DAP0.848880.522
52DAP/47DAP1.152840.646
57DAP/52DAP1.131410.962

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.391720.023
17DAP/reference1.016160.904
27DAP/reference0.945410.457
39DAP/reference0.885010.194
41DAP/reference1.070930.855
42DAP/reference2.602080.001
43DAP/reference1.076170.73
47DAP/reference1.402850.018
52DAP/reference1.188690.548
57DAP/reference1.120150.18

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.177790.445
27DAP/17DAP0.872740.259
39DAP/27DAP0.838520.092
41DAP/39DAP1.071580.774
42DAP/41DAP0.91010.322
43DAP/42DAP0.951820.597
47DAP/43DAP1.089720.432
52DAP/47DAP1.020530.945
57DAP/52DAP1.100730.489
57DAP/7DAP0.902991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.972160.55
17DAP/reference0.96330.22
27DAP/reference0.914840.062
39DAP/reference1.106430.05
41DAP/reference0.980160.431
42DAP/reference0.949270.355
43DAP/reference1.130670.344
47DAP/reference1.072720.618
52DAP/reference1.151090.139
57DAP/reference1.162630.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.957870.639
17DAP/reference1.435050.037
27DAP/reference1.497120.044
39DAP/reference1.601140.011
41DAP/reference1.448780.008
42DAP/reference1.633150.008
43DAP/reference1.231510.373
47DAP/reference1.87870.01
52DAP/reference0.884810.04
57DAP/reference1.85830.038

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.853360.077
17DAP/reference0.874980.214
27DAP/reference1.105010.248
39DAP/reference0.985880.544
41DAP/reference0.910740.237
42DAP/reference0.966320.671
43DAP/reference1.115560.499
47DAP/reference1.212860.73
52DAP/reference0.991280.821
57DAP/reference1.808880.024

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.029081
26DAP/20DAP1.259370.415
34DAP/26DAP0.960430.753
51DAP/34DAP1.012580.988
52DAP/51DAP0.812140.07
53DAP/52DAP0.933180.797
55DAP/53DAP0.781130.35
57DAP/55DAP1.138560.492
62DAP/57DAP1.135750.393
68DAP/62DAP1.096380.885
68DAP/14DAP0.971321

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.727540.042

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.744850.29
Mature Green Tomato/Ripe Tomato1.476840.267
Immature Eggplant/Mature Eggplant0.734290.07
Ripe Pepper/Ripe Tomato0.646470.293
Mature Eggplant/Ripe Tomato1.019571

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.142221
12-2/M824.07422
12-4/M820.714820.619
1-3/M82N/AN/A
2-1-1/M821.137530.764
2-1/M820.91856
2-6/M821.674220.695
3-2/M820.901960.752
4-1-1/M821.428271
4-1/M821.19983
4-3-2/M821.036451
4-3/M821.435871
5-3/M820.2530.374
6-2/M821.37891
6-3/M821.13591
7-1/M820.549710.803
7-2/M821.521620.385
9-3-2/M821.09731

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.009681
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.023711
IL12-4/WTpooled0.993771
IL1-4/WTpooled0.76154
WT/WTpooled0.934661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.949810.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.24680.894
DC3000/delta hrp 6h0.688050.937
DC3000/delta hrp 12h1.20622
DC3000/delta hrp 24h1.114321

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.242040.032
DC3000 delta B/DC3000 delta AB0.343170.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.063981
Exp 36h1.045741
Exp 60h1.014911

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018171
Var 0h1.160910.782
Var 12h I row2-row10.727340.357
Var 12h NI row2-row10.936750.627
Var 36h I row2-row10.760340.805
Var 36h NI row2-row11.072381
Var 60h I row2-row11.032321
Var 60h NI row2-row11.013341
Time course 0hI-0hNI1.062880.764
Time course 12hI-12hNI0.995121
Time course 36hI-36hNI0.995320.73
Time course 60hI-60hNI0.268430.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.150860.271
transgenic ySAMdc/azygous control (breaker)0.622010.142
transgenic ySAMdc/azygous control (red)1.15560.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.499690.03

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.395990.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.831180.172
Manapal/WT (break)0.594140.333
Manapal/WT (red)0.474950.181