Expression of 1-1-5.3.11.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.246130.414
27DAP/17DAP1.102330.859
39DAP/27DAP0.719580.361
41DAP/39DAP0.866690.53
42DAP/41DAP0.813330.774
43DAP/42DAP0.88590.613
47DAP/43DAP1.121180.527
52DAP/47DAP1.225880.581
57DAP/52DAP1.052140.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.027690.9
17DAP/reference0.944670.138
27DAP/reference0.972720.581
39DAP/reference1.052170.639
41DAP/reference0.999741
42DAP/reference1.014561
43DAP/reference1.024750.678
47DAP/reference0.915760.098
52DAP/reference0.867690.128
57DAP/reference0.888590.036

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.014820.05
27DAP/17DAP1.147770.569
39DAP/27DAP0.728850.068
41DAP/39DAP0.947950.861
42DAP/41DAP1.057970.947
43DAP/42DAP0.651220.025
47DAP/43DAP0.911620.043
52DAP/47DAP1.112390.616
57DAP/52DAP1.005931
57DAP/7DAP1.047061

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076620.501
17DAP/reference1.126790.016
27DAP/reference1.031710.551
39DAP/reference1.029990.297
41DAP/reference1.158090.077
42DAP/reference1.164870.037
43DAP/reference1.353550.041
47DAP/reference0.933640.383
52DAP/reference1.260610.076
57DAP/reference1.32540.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.981450.756
17DAP/reference1.089580.046
27DAP/reference0.961180.407
39DAP/reference0.993180.621
41DAP/reference1.08430.309
42DAP/reference1.018421
43DAP/reference1.188070.199
47DAP/reference1.040370.621
52DAP/reference0.980840.407
57DAP/reference1.107630.182

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.98530.566
17DAP/reference1.012290.865
27DAP/reference1.099210.043
39DAP/reference1.108830.041
41DAP/reference1.109130.048
42DAP/reference1.027270.635
43DAP/reference0.962840.468
47DAP/reference0.996170.687
52DAP/reference0.972880.675
57DAP/reference0.914970.154

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.966451
26DAP/20DAP0.940931
34DAP/26DAP0.94520.642
51DAP/34DAP0.96860.722
52DAP/51DAP1.038270.596
53DAP/52DAP0.912540.862
55DAP/53DAP1.045950.955
57DAP/55DAP0.982260.875
62DAP/57DAP1.020721
68DAP/62DAP1.072320.899
68DAP/14DAP1.33650.346

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.471610.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.70450.257
Mature Green Tomato/Ripe Tomato2.063590.017
Immature Eggplant/Mature Eggplant0.288730.089
Ripe Pepper/Ripe Tomato1.947171
Mature Eggplant/Ripe Tomato1.384561

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.99271
1-1-2/M821.00031
12-2/M821.055110.519
12-4/M820.943291
1-3/M820.902190.441
2-1-1/M821.41079
2-1/M820.99877
2-6/M820.960131
3-2/M820.990761
4-1-1/M821.039241
4-1/M820.97766
4-3-2/M820.88221
4-3/M821.10471
5-3/M820.838721
6-2/M821.095041
6-3/M820.927021
7-1/M820.933470.509
7-2/M821.07391
9-3-2/M820.860970.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.244290.531
IL7-5/WTpooled0.54562
IL7-3/WTpooled1.003091
IL12-4/WTpooled1.024151
IL1-4/WTpooled1.248431
WT/WTpooled1.138151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.032281

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.991391
DC3000/delta hrp 6h1.0726
DC3000/delta hrp 12h1.083291
DC3000/delta hrp 24h1.042150.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.051370.408
DC3000 delta B/DC3000 delta AB1.04120.524

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.397891
Exp 60h1.564890.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.006981
Var 0h0.88960.933
Var 12h I row2-row11.051720.379
Var 12h NI row2-row10.859520.713
Var 36h I row2-row10.896681
Var 36h NI row2-row11.130320.482
Var 60h I row2-row11.184820.562
Var 60h NI row2-row11.158650.904
Time course 0hI-0hNI1.073110.574
Time course 12hI-12hNI0.931060.125
Time course 36hI-36hNI0.937840.102
Time course 60hI-60hNI0.611260.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.708630.265
transgenic ySAMdc/azygous control (breaker)0.985211
transgenic ySAMdc/azygous control (red)1.244460.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.986760.343

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.4440.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.293060.307
Manapal/WT (break)0.537630.299
Manapal/WT (red)1.071131