Expression of 1-1-5.3.11.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.140140.904
27DAP/17DAP1.001971
39DAP/27DAP1.633830.182
41DAP/39DAP0.903890.586
42DAP/41DAP0.819450.774
43DAP/42DAP1.010670.937
47DAP/43DAP0.762060.308
52DAP/47DAP1.804010.228
57DAP/52DAP1.100450.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.966650.513
17DAP/reference0.953280.536
27DAP/reference0.991130.779
39DAP/reference0.97650.75
41DAP/reference0.879880.013
42DAP/reference1.219280.001
43DAP/reference1.123110.028
47DAP/reference0.975560.322
52DAP/reference0.803320.069
57DAP/reference0.949670.248

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.852820.219
27DAP/17DAP0.947460.537
39DAP/27DAP1.048990.611
41DAP/39DAP0.927760.713
42DAP/41DAP1.208480.067
43DAP/42DAP1.092880.147
47DAP/43DAP1.0260.92
52DAP/47DAP0.853930.23
57DAP/52DAP1.089470.466
57DAP/7DAP1.229250.22

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.359430.227
17DAP/reference1.079350.009
27DAP/reference1.318760.006
39DAP/reference1.054490.46
41DAP/reference1.097140.35
42DAP/reference1.18260.008
43DAP/reference1.871860.074
47DAP/reference1.72040.019
52DAP/referenceN/AN/A
57DAP/reference1.133110.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.973120.688
17DAP/reference0.815810.025
27DAP/reference1.286210.178
39DAP/reference0.902610.099
41DAP/reference1.073870.548
42DAP/reference1.067040.649
43DAP/reference0.75750.033
47DAP/reference0.91730.055
52DAP/reference0.648640.003
57DAP/reference0.575220.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.137780.19
17DAP/reference0.857950.182
27DAP/reference1.134150.198
39DAP/reference1.469670.009
41DAP/reference1.148170.06
42DAP/reference1.486580.01
43DAP/reference1.443440.026
47DAP/reference0.806570.007
52DAP/reference1.205180.33
57DAP/reference1.049990.706

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.075060.966
26DAP/20DAP1.03750.896
34DAP/26DAP0.943150.675
51DAP/34DAP1.141310.251
52DAP/51DAP0.976431
53DAP/52DAP1.10360.643
55DAP/53DAP0.918060.489
57DAP/55DAP1.033750.881
62DAP/57DAP0.960770.871
68DAP/62DAP1.183380.549
68DAP/14DAP1.335880.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.616490.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.689350.179
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.87480.05
Ripe Pepper/Ripe Tomato0.756531
Mature Eggplant/Ripe Tomato0.354740.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.049130.877
1-1-2/M820.985111
12-2/M820.999931
12-4/M821.089481
1-3/M821.330620.479
2-1-1/M820.856570.784
2-1/M821.048511
2-6/M820.973561
3-2/M820.993681
4-1-1/M821.071231
4-1/M820.84572
4-3-2/M821.092421
4-3/M820.963451
5-3/M821.10410.572
6-2/M821.047321
6-3/M820.993741
7-1/M820.937340.476
7-2/M820.98261
9-3-2/M821.637551

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.280540.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.977061
IL12-4/WTpooled0.876550.554
IL1-4/WTpooled0.893230.457
WT/WTpooled0.899471

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.213090.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.992141
DC3000/delta hrp 6h0.775880.942
DC3000/delta hrp 12h1.076551
DC3000/delta hrp 24h1.000991

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.980741
DC3000 delta B/DC3000 delta AB1.03930.544

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.17861
Exp 36h1.313721
Exp 60h1.191730.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.00841
Var 0h1.043161
Var 12h I row2-row11.09920.196
Var 12h NI row2-row11.053860.649
Var 36h I row2-row10.780630.805
Var 36h NI row2-row10.898230.522
Var 60h I row2-row11.088811
Var 60h NI row2-row11.059750.904
Time course 0hI-0hNI1.087590.574
Time course 12hI-12hNI1.017770.818
Time course 36hI-36hNI0.990640.665
Time course 60hI-60hNI1.626570.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.214310.455
transgenic ySAMdc/azygous control (breaker)0.911830.49
transgenic ySAMdc/azygous control (red)1.136490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.223990.051

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.824150.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.233450.307
Manapal/WT (break)1.097360.381
Manapal/WT (red)0.92370.242