Expression of 1-1-5.3.11.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14014 | 0.904 |
27DAP/17DAP | 1.00197 | 1 |
39DAP/27DAP | 1.63383 | 0.182 |
41DAP/39DAP | 0.90389 | 0.586 |
42DAP/41DAP | 0.81945 | 0.774 |
43DAP/42DAP | 1.01067 | 0.937 |
47DAP/43DAP | 0.76206 | 0.308 |
52DAP/47DAP | 1.80401 | 0.228 |
57DAP/52DAP | 1.10045 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96665 | 0.513 |
17DAP/reference | 0.95328 | 0.536 |
27DAP/reference | 0.99113 | 0.779 |
39DAP/reference | 0.9765 | 0.75 |
41DAP/reference | 0.87988 | 0.013 |
42DAP/reference | 1.21928 | 0.001 |
43DAP/reference | 1.12311 | 0.028 |
47DAP/reference | 0.97556 | 0.322 |
52DAP/reference | 0.80332 | 0.069 |
57DAP/reference | 0.94967 | 0.248 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85282 | 0.219 |
27DAP/17DAP | 0.94746 | 0.537 |
39DAP/27DAP | 1.04899 | 0.611 |
41DAP/39DAP | 0.92776 | 0.713 |
42DAP/41DAP | 1.20848 | 0.067 |
43DAP/42DAP | 1.09288 | 0.147 |
47DAP/43DAP | 1.026 | 0.92 |
52DAP/47DAP | 0.85393 | 0.23 |
57DAP/52DAP | 1.08947 | 0.466 |
57DAP/7DAP | 1.22925 | 0.22 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35943 | 0.227 |
17DAP/reference | 1.07935 | 0.009 |
27DAP/reference | 1.31876 | 0.006 |
39DAP/reference | 1.05449 | 0.46 |
41DAP/reference | 1.09714 | 0.35 |
42DAP/reference | 1.1826 | 0.008 |
43DAP/reference | 1.87186 | 0.074 |
47DAP/reference | 1.7204 | 0.019 |
52DAP/reference | N/A | N/A |
57DAP/reference | 1.13311 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97312 | 0.688 |
17DAP/reference | 0.81581 | 0.025 |
27DAP/reference | 1.28621 | 0.178 |
39DAP/reference | 0.90261 | 0.099 |
41DAP/reference | 1.07387 | 0.548 |
42DAP/reference | 1.06704 | 0.649 |
43DAP/reference | 0.7575 | 0.033 |
47DAP/reference | 0.9173 | 0.055 |
52DAP/reference | 0.64864 | 0.003 |
57DAP/reference | 0.57522 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13778 | 0.19 |
17DAP/reference | 0.85795 | 0.182 |
27DAP/reference | 1.13415 | 0.198 |
39DAP/reference | 1.46967 | 0.009 |
41DAP/reference | 1.14817 | 0.06 |
42DAP/reference | 1.48658 | 0.01 |
43DAP/reference | 1.44344 | 0.026 |
47DAP/reference | 0.80657 | 0.007 |
52DAP/reference | 1.20518 | 0.33 |
57DAP/reference | 1.04999 | 0.706 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07506 | 0.966 |
26DAP/20DAP | 1.0375 | 0.896 |
34DAP/26DAP | 0.94315 | 0.675 |
51DAP/34DAP | 1.14131 | 0.251 |
52DAP/51DAP | 0.97643 | 1 |
53DAP/52DAP | 1.1036 | 0.643 |
55DAP/53DAP | 0.91806 | 0.489 |
57DAP/55DAP | 1.03375 | 0.881 |
62DAP/57DAP | 0.96077 | 0.871 |
68DAP/62DAP | 1.18338 | 0.549 |
68DAP/14DAP | 1.33588 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.61649 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.68935 | 0.179 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.8748 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.75653 | 1 |
Mature Eggplant/Ripe Tomato | 0.35474 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04913 | 0.877 |
1-1-2/M82 | 0.98511 | 1 |
12-2/M82 | 0.99993 | 1 |
12-4/M82 | 1.08948 | 1 |
1-3/M82 | 1.33062 | 0.479 |
2-1-1/M82 | 0.85657 | 0.784 |
2-1/M82 | 1.04851 | 1 |
2-6/M82 | 0.97356 | 1 |
3-2/M82 | 0.99368 | 1 |
4-1-1/M82 | 1.07123 | 1 |
4-1/M82 | 0.84572 | |
4-3-2/M82 | 1.09242 | 1 |
4-3/M82 | 0.96345 | 1 |
5-3/M82 | 1.1041 | 0.572 |
6-2/M82 | 1.04732 | 1 |
6-3/M82 | 0.99374 | 1 |
7-1/M82 | 0.93734 | 0.476 |
7-2/M82 | 0.9826 | 1 |
9-3-2/M82 | 1.63755 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.28054 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.97706 | 1 |
IL12-4/WTpooled | 0.87655 | 0.554 |
IL1-4/WTpooled | 0.89323 | 0.457 |
WT/WTpooled | 0.89947 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21309 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99214 | 1 |
DC3000/delta hrp 6h | 0.77588 | 0.942 |
DC3000/delta hrp 12h | 1.07655 | 1 |
DC3000/delta hrp 24h | 1.00099 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.98074 | 1 |
DC3000 delta B/DC3000 delta AB | 1.0393 | 0.544 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1786 | 1 |
Exp 36h | 1.31372 | 1 |
Exp 60h | 1.19173 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0084 | 1 |
Var 0h | 1.04316 | 1 |
Var 12h I row2-row1 | 1.0992 | 0.196 |
Var 12h NI row2-row1 | 1.05386 | 0.649 |
Var 36h I row2-row1 | 0.78063 | 0.805 |
Var 36h NI row2-row1 | 0.89823 | 0.522 |
Var 60h I row2-row1 | 1.08881 | 1 |
Var 60h NI row2-row1 | 1.05975 | 0.904 |
Time course 0hI-0hNI | 1.08759 | 0.574 |
Time course 12hI-12hNI | 1.01777 | 0.818 |
Time course 36hI-36hNI | 0.99064 | 0.665 |
Time course 60hI-60hNI | 1.62657 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.21431 | 0.455 |
transgenic ySAMdc/azygous control (breaker) | 0.91183 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.13649 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.22399 | 0.051 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82415 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.23345 | 0.307 |
Manapal/WT (break) | 1.09736 | 0.381 |
Manapal/WT (red) | 0.9237 | 0.242 |
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