Expression of 1-1-5.3.11.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.91850.586
27DAP/17DAP1.067561
39DAP/27DAP0.990340.82
41DAP/39DAP1.048830.978
42DAP/41DAP0.993031
43DAP/42DAP0.894770.801
47DAP/43DAP1.364340.364
52DAP/47DAP0.875110.695
57DAP/52DAP0.886780.82

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.041820.71
17DAP/reference1.152050.138
27DAP/reference0.925470.314
39DAP/reference1.102320.679
41DAP/reference0.980330.814
42DAP/reference0.856370.007
43DAP/reference0.89030.08
47DAP/reference0.880650.077
52DAP/reference1.057950.633
57DAP/reference0.975250.479

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.82450.415
27DAP/17DAP0.977370.919
39DAP/27DAP0.929320.426
41DAP/39DAP1.524320.183
42DAP/41DAP0.903890.552
43DAP/42DAP1.341540.052
47DAP/43DAP1.550010.618
52DAP/47DAP0.836130.309
57DAP/52DAP0.975180.784
57DAP/7DAP1.284871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.953380.445
17DAP/reference0.845540.025
27DAP/reference0.918690.125
39DAP/reference0.791590.014
41DAP/reference0.752140.047
42DAP/reference0.801780.082
43DAP/reference1.145920.788
47DAP/reference0.92170.383
52DAP/reference0.796070.115
57DAP/reference0.740940.021

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.062130.66
17DAP/reference1.144910.723
27DAP/reference0.977580.537
39DAP/reference1.068470.978
41DAP/reference0.760210.04
42DAP/reference1.095660.369
43DAP/reference1.146090.473
47DAP/reference1.030430.695
52DAP/reference0.976330.5
57DAP/reference1.135250.437

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.989150.653
17DAP/reference0.950750.508
27DAP/reference0.819540.069
39DAP/reference0.752220.01
41DAP/reference0.930770.371
42DAP/reference0.849790.041
43DAP/reference0.764030.019
47DAP/reference0.999040.626
52DAP/reference0.868680.223
57DAP/reference0.728670.041

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.057690.966
26DAP/20DAP0.7451
34DAP/26DAP1.412881
51DAP/34DAP0.948270.844
52DAP/51DAP1.03781
53DAP/52DAP1.212030.738
55DAP/53DAP0.846630.102
57DAP/55DAP1.117550.968
62DAP/57DAP0.960180.994
68DAP/62DAP1.313380.821
68DAP/14DAP1.245780.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.076370.7

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.26405
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.11536
1-3/M82N/AN/A
2-1-1/M820.77451
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.07958
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.352290.456
IL7-5/WTpooled0.49836
IL7-3/WTpooled1.275431
IL12-4/WTpooled0.967040.566
IL1-4/WTpooled1.1252
WT/WTpooled0.997971

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.204670.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.855790.664
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.184531
DC3000/delta hrp 24h1.071971

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.068991
Var 0h1.046480.98
Var 12h I row2-row11.31610.242
Var 12h NI row2-row10.855010.488
Var 36h I row2-row10.887860.805
Var 36h NI row2-row11.049951
Var 60h I row2-row11.052921
Var 60h NI row2-row10.648251
Time course 0hI-0hNI1.002851
Time course 12hI-12hNI1.145930.168
Time course 36hI-36hNI1.067330.218
Time course 60hI-60hNI1.000851

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.378060.654
transgenic ySAMdc/azygous control (breaker)0.695820.173
transgenic ySAMdc/azygous control (red)1.204950.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.922640.067

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.041860.105
Manapal/WT (break)1.194370.381
Manapal/WT (red)0.857240.503