Expression of 1-1-5.3.11.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9185 | 0.586 |
27DAP/17DAP | 1.06756 | 1 |
39DAP/27DAP | 0.99034 | 0.82 |
41DAP/39DAP | 1.04883 | 0.978 |
42DAP/41DAP | 0.99303 | 1 |
43DAP/42DAP | 0.89477 | 0.801 |
47DAP/43DAP | 1.36434 | 0.364 |
52DAP/47DAP | 0.87511 | 0.695 |
57DAP/52DAP | 0.88678 | 0.82 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04182 | 0.71 |
17DAP/reference | 1.15205 | 0.138 |
27DAP/reference | 0.92547 | 0.314 |
39DAP/reference | 1.10232 | 0.679 |
41DAP/reference | 0.98033 | 0.814 |
42DAP/reference | 0.85637 | 0.007 |
43DAP/reference | 0.8903 | 0.08 |
47DAP/reference | 0.88065 | 0.077 |
52DAP/reference | 1.05795 | 0.633 |
57DAP/reference | 0.97525 | 0.479 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8245 | 0.415 |
27DAP/17DAP | 0.97737 | 0.919 |
39DAP/27DAP | 0.92932 | 0.426 |
41DAP/39DAP | 1.52432 | 0.183 |
42DAP/41DAP | 0.90389 | 0.552 |
43DAP/42DAP | 1.34154 | 0.052 |
47DAP/43DAP | 1.55001 | 0.618 |
52DAP/47DAP | 0.83613 | 0.309 |
57DAP/52DAP | 0.97518 | 0.784 |
57DAP/7DAP | 1.28487 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95338 | 0.445 |
17DAP/reference | 0.84554 | 0.025 |
27DAP/reference | 0.91869 | 0.125 |
39DAP/reference | 0.79159 | 0.014 |
41DAP/reference | 0.75214 | 0.047 |
42DAP/reference | 0.80178 | 0.082 |
43DAP/reference | 1.14592 | 0.788 |
47DAP/reference | 0.9217 | 0.383 |
52DAP/reference | 0.79607 | 0.115 |
57DAP/reference | 0.74094 | 0.021 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06213 | 0.66 |
17DAP/reference | 1.14491 | 0.723 |
27DAP/reference | 0.97758 | 0.537 |
39DAP/reference | 1.06847 | 0.978 |
41DAP/reference | 0.76021 | 0.04 |
42DAP/reference | 1.09566 | 0.369 |
43DAP/reference | 1.14609 | 0.473 |
47DAP/reference | 1.03043 | 0.695 |
52DAP/reference | 0.97633 | 0.5 |
57DAP/reference | 1.13525 | 0.437 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98915 | 0.653 |
17DAP/reference | 0.95075 | 0.508 |
27DAP/reference | 0.81954 | 0.069 |
39DAP/reference | 0.75222 | 0.01 |
41DAP/reference | 0.93077 | 0.371 |
42DAP/reference | 0.84979 | 0.041 |
43DAP/reference | 0.76403 | 0.019 |
47DAP/reference | 0.99904 | 0.626 |
52DAP/reference | 0.86868 | 0.223 |
57DAP/reference | 0.72867 | 0.041 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05769 | 0.966 |
26DAP/20DAP | 0.7451 | |
34DAP/26DAP | 1.41288 | 1 |
51DAP/34DAP | 0.94827 | 0.844 |
52DAP/51DAP | 1.0378 | 1 |
53DAP/52DAP | 1.21203 | 0.738 |
55DAP/53DAP | 0.84663 | 0.102 |
57DAP/55DAP | 1.11755 | 0.968 |
62DAP/57DAP | 0.96018 | 0.994 |
68DAP/62DAP | 1.31338 | 0.821 |
68DAP/14DAP | 1.24578 | 0.889 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07637 | 0.7 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.26405 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.11536 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.77451 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.07958 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.35229 | 0.456 |
IL7-5/WTpooled | 0.49836 | |
IL7-3/WTpooled | 1.27543 | 1 |
IL12-4/WTpooled | 0.96704 | 0.566 |
IL1-4/WTpooled | 1.1252 | |
WT/WTpooled | 0.99797 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20467 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.85579 | 0.664 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.18453 | 1 |
DC3000/delta hrp 24h | 1.07197 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06899 | 1 |
Var 0h | 1.04648 | 0.98 |
Var 12h I row2-row1 | 1.3161 | 0.242 |
Var 12h NI row2-row1 | 0.85501 | 0.488 |
Var 36h I row2-row1 | 0.88786 | 0.805 |
Var 36h NI row2-row1 | 1.04995 | 1 |
Var 60h I row2-row1 | 1.05292 | 1 |
Var 60h NI row2-row1 | 0.64825 | 1 |
Time course 0hI-0hNI | 1.00285 | 1 |
Time course 12hI-12hNI | 1.14593 | 0.168 |
Time course 36hI-36hNI | 1.06733 | 0.218 |
Time course 60hI-60hNI | 1.00085 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.37806 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 0.69582 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.20495 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92264 | 0.067 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.04186 | 0.105 |
Manapal/WT (break) | 1.19437 | 0.381 |
Manapal/WT (red) | 0.85724 | 0.503 |
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