Expression of 1-1-5.3.12.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.00940.823
27DAP/17DAP1.036191
39DAP/27DAP0.847610.462
41DAP/39DAP0.799680.401
42DAP/41DAP1.007731
43DAP/42DAP1.117031
47DAP/43DAP0.983910.36
52DAP/47DAP0.779210.476
57DAP/52DAP1.04260.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.56649
17DAP/referenceN/AN/A
27DAP/reference0.801960.385
39DAP/referenceN/AN/A
41DAP/reference2.44399
42DAP/reference0.94440.305
43DAP/referenceN/AN/A
47DAP/reference1.23450.391
52DAP/reference2.89757
57DAP/reference0.64008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.90963
27DAP/17DAP1.11116
39DAP/27DAP0.916990.821
41DAP/39DAP0.735710.839
42DAP/41DAP1.09890.734
43DAP/42DAP3.88244
47DAP/43DAP0.800710.037
52DAP/47DAP0.648940.572
57DAP/52DAP0.848160.56
57DAP/7DAP0.58822

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.292940.124
17DAP/reference1.018860.896
27DAP/reference0.865630.117
39DAP/reference1.179120.436
41DAP/reference1.030340.848
42DAP/reference1.012580.713
43DAP/reference1.143810.325
47DAP/reference1.250630.761
52DAP/reference0.790920.137
57DAP/reference1.095530.612

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference4.18411
27DAP/reference0.991270.735
39DAP/reference1.93846
41DAP/reference1.382650.262
42DAP/reference2.45761
43DAP/reference1.698880.288
47DAP/reference2.36763
52DAP/reference1.53176
57DAP/reference1.187170.654

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.607250.027
17DAP/reference1.303610.273
27DAP/reference1.107380.237
39DAP/reference1.192440.196
41DAP/reference0.990860.754
42DAP/reference0.915540.361
43DAP/reference0.926040.416
47DAP/reference1.066170.901
52DAP/reference1.147950.888
57DAP/reference0.75965

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.806761
26DAP/20DAP1.0261
34DAP/26DAP0.985511
51DAP/34DAP1.311990.511
52DAP/51DAP1.157390.606
53DAP/52DAP1.220620.901
55DAP/53DAP0.50181
57DAP/55DAP2.06499
62DAP/57DAP1.486390.006
68DAP/62DAP0.3043
68DAP/14DAP1.868020.08

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.57741
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato7.42656
Mature Eggplant/Ripe Tomato5.060490.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M820.93998
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.70669
IL1-4/WTpooled0.947041
WT/WTpooled1.091281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.103971
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.26890.216
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.90804
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)3.764370.133