Expression of 1-1-5.3.13.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02355 | 0.964 |
27DAP/17DAP | 1.20515 | 0.822 |
39DAP/27DAP | 0.91798 | 0.594 |
41DAP/39DAP | 1.15879 | 0.569 |
42DAP/41DAP | 1.00185 | 1 |
43DAP/42DAP | 0.89142 | 0.761 |
47DAP/43DAP | 1.07752 | 0.769 |
52DAP/47DAP | 0.99187 | 0.924 |
57DAP/52DAP | 0.98496 | 0.976 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99964 | 0.824 |
17DAP/reference | 1.02999 | 0.21 |
27DAP/reference | 1.0064 | 1 |
39DAP/reference | 1.03865 | 0.224 |
41DAP/reference | 0.94621 | 0.434 |
42DAP/reference | 0.97645 | 0.326 |
43DAP/reference | 0.98694 | 0.763 |
47DAP/reference | 0.95569 | 0.065 |
52DAP/reference | 0.9903 | 0.668 |
57DAP/reference | 0.99671 | 0.736 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99833 | 0.899 |
27DAP/17DAP | 0.96308 | 0.614 |
39DAP/27DAP | 1.03521 | 0.646 |
41DAP/39DAP | 1.02407 | 0.781 |
42DAP/41DAP | 0.9629 | 0.595 |
43DAP/42DAP | 1.00307 | 0.788 |
47DAP/43DAP | 1.01297 | 0.897 |
52DAP/47DAP | 1.03949 | 0.823 |
57DAP/52DAP | 1.00497 | 1 |
57DAP/7DAP | 0.99819 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01203 | 1 |
17DAP/reference | 1.33587 | 0.023 |
27DAP/reference | 1.28224 | 0.107 |
39DAP/reference | 1.71707 | 0.005 |
41DAP/reference | 1.31421 | 0.066 |
42DAP/reference | 1.54487 | 0.006 |
43DAP/reference | 1.74841 | 0.007 |
47DAP/reference | 1.4129 | 0.182 |
52DAP/reference | 1.33025 | 0.023 |
57DAP/reference | 1.35438 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96056 | 0.353 |
17DAP/reference | 0.96436 | 0.461 |
27DAP/reference | 0.94675 | 0.24 |
39DAP/reference | 0.92755 | 0.065 |
41DAP/reference | 0.95623 | 0.205 |
42DAP/reference | 1.01092 | 1 |
43DAP/reference | 0.98166 | 0.657 |
47DAP/reference | 1.08923 | 0.074 |
52DAP/reference | 0.97667 | 0.351 |
57DAP/reference | 1.0462 | 0.523 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05884 | 0.659 |
17DAP/reference | 1.00775 | 1 |
27DAP/reference | 1.27247 | 0.056 |
39DAP/reference | 1.52755 | 0.024 |
41DAP/reference | 1.41316 | 0.007 |
42DAP/reference | 1.33781 | 0.091 |
43DAP/reference | 1.17891 | 0.452 |
47DAP/reference | 0.98308 | 0.421 |
52DAP/reference | 1.39823 | 0.15 |
57DAP/reference | 1.47529 | 0.311 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99831 | 1 |
26DAP/20DAP | 1.0247 | 0.988 |
34DAP/26DAP | 0.98201 | 0.988 |
51DAP/34DAP | 1.0319 | 0.719 |
52DAP/51DAP | 0.96465 | 1 |
53DAP/52DAP | 1.01823 | 0.901 |
55DAP/53DAP | 0.96054 | 0.478 |
57DAP/55DAP | 0.94069 | 0.691 |
62DAP/57DAP | 0.97536 | 0.994 |
68DAP/62DAP | 1.00432 | 1 |
68DAP/14DAP | 1.32797 | 0.346 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.00388 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.93339 | 0.539 |
Mature Green Tomato/Ripe Tomato | 0.99419 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.3396 | 0.052 |
Ripe Pepper/Ripe Tomato | 0.92001 | 1 |
Mature Eggplant/Ripe Tomato | 0.88054 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08831 | 0.877 |
1-1-2/M82 | 0.99323 | 1 |
12-2/M82 | 0.93901 | 0.955 |
12-4/M82 | 0.95513 | 1 |
1-3/M82 | 1.00347 | 1 |
2-1-1/M82 | 1.05295 | |
2-1/M82 | 1.38058 | 1 |
2-6/M82 | 0.97805 | 1 |
3-2/M82 | 0.94779 | 1 |
4-1-1/M82 | 1.07022 | 1 |
4-1/M82 | 0.94775 | 1 |
4-3-2/M82 | 0.84658 | 1 |
4-3/M82 | 0.95325 | 1 |
5-3/M82 | 1.08364 | 1 |
6-2/M82 | 0.99927 | 1 |
6-3/M82 | 0.95328 | 1 |
7-1/M82 | 0.89606 | 0.803 |
7-2/M82 | 1.03222 | 1 |
9-3-2/M82 | 0.87616 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.72854 | 0.247 |
IL2-6/WTpooled | 1.1013 | 0.584 |
IL7-5/WTpooled | 1.55612 | 1 |
IL7-3/WTpooled | 0.93451 | 0.31 |
IL12-4/WTpooled | 1.10618 | 0.891 |
IL1-4/WTpooled | 1.04337 | 1 |
WT/WTpooled | 1.05185 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09325 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01883 | 1 |
DC3000/delta hrp 6h | 1.03766 | 1 |
DC3000/delta hrp 12h | 1.01296 | 1 |
DC3000/delta hrp 24h | 1.04516 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07453 | 0.11 |
DC3000 delta B/DC3000 delta AB | 1.05394 | 0.491 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.28182 | 0.254 |
Exp 36h | 1.34865 | 0.409 |
Exp 60h | 1.67666 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98156 | 1 |
Var 0h | 0.90212 | 1 |
Var 12h I row2-row1 | 1.12293 | 0.204 |
Var 12h NI row2-row1 | 0.93197 | 0.713 |
Var 36h I row2-row1 | 0.8653 | 0.805 |
Var 36h NI row2-row1 | 0.93119 | 0.522 |
Var 60h I row2-row1 | 1.09387 | 1 |
Var 60h NI row2-row1 | 1.0944 | 0.904 |
Time course 0hI-0hNI | 1.05341 | 0.852 |
Time course 12hI-12hNI | 1.07903 | 0.633 |
Time course 36hI-36hNI | 1.13328 | 0.007 |
Time course 60hI-60hNI | 1.77557 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8484 | 0.285 |
transgenic ySAMdc/azygous control (breaker) | 0.98132 | 1 |
transgenic ySAMdc/azygous control (red) | 1.01566 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02354 | 0.119 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.64147 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06152 | 0.307 |
Manapal/WT (break) | 0.77716 | 0.297 |
Manapal/WT (red) | 0.59309 | 0.181 |
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