Expression of 1-1-5.3.13.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.023550.964
27DAP/17DAP1.205150.822
39DAP/27DAP0.917980.594
41DAP/39DAP1.158790.569
42DAP/41DAP1.001851
43DAP/42DAP0.891420.761
47DAP/43DAP1.077520.769
52DAP/47DAP0.991870.924
57DAP/52DAP0.984960.976

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.999640.824
17DAP/reference1.029990.21
27DAP/reference1.00641
39DAP/reference1.038650.224
41DAP/reference0.946210.434
42DAP/reference0.976450.326
43DAP/reference0.986940.763
47DAP/reference0.955690.065
52DAP/reference0.99030.668
57DAP/reference0.996710.736

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.998330.899
27DAP/17DAP0.963080.614
39DAP/27DAP1.035210.646
41DAP/39DAP1.024070.781
42DAP/41DAP0.96290.595
43DAP/42DAP1.003070.788
47DAP/43DAP1.012970.897
52DAP/47DAP1.039490.823
57DAP/52DAP1.004971
57DAP/7DAP0.998191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.012031
17DAP/reference1.335870.023
27DAP/reference1.282240.107
39DAP/reference1.717070.005
41DAP/reference1.314210.066
42DAP/reference1.544870.006
43DAP/reference1.748410.007
47DAP/reference1.41290.182
52DAP/reference1.330250.023
57DAP/reference1.354380.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960560.353
17DAP/reference0.964360.461
27DAP/reference0.946750.24
39DAP/reference0.927550.065
41DAP/reference0.956230.205
42DAP/reference1.010921
43DAP/reference0.981660.657
47DAP/reference1.089230.074
52DAP/reference0.976670.351
57DAP/reference1.04620.523

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.058840.659
17DAP/reference1.007751
27DAP/reference1.272470.056
39DAP/reference1.527550.024
41DAP/reference1.413160.007
42DAP/reference1.337810.091
43DAP/reference1.178910.452
47DAP/reference0.983080.421
52DAP/reference1.398230.15
57DAP/reference1.475290.311

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.998311
26DAP/20DAP1.02470.988
34DAP/26DAP0.982010.988
51DAP/34DAP1.03190.719
52DAP/51DAP0.964651
53DAP/52DAP1.018230.901
55DAP/53DAP0.960540.478
57DAP/55DAP0.940690.691
62DAP/57DAP0.975360.994
68DAP/62DAP1.004321
68DAP/14DAP1.327970.346

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.003881

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.933390.539
Mature Green Tomato/Ripe Tomato0.994190.715
Immature Eggplant/Mature Eggplant1.33960.052
Ripe Pepper/Ripe Tomato0.920011
Mature Eggplant/Ripe Tomato0.880541

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.088310.877
1-1-2/M820.993231
12-2/M820.939010.955
12-4/M820.955131
1-3/M821.003471
2-1-1/M821.05295
2-1/M821.380581
2-6/M820.978051
3-2/M820.947791
4-1-1/M821.070221
4-1/M820.947751
4-3-2/M820.846581
4-3/M820.953251
5-3/M821.083641
6-2/M820.999271
6-3/M820.953281
7-1/M820.896060.803
7-2/M821.032221
9-3-2/M820.876160.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.728540.247
IL2-6/WTpooled1.10130.584
IL7-5/WTpooled1.556121
IL7-3/WTpooled0.934510.31
IL12-4/WTpooled1.106180.891
IL1-4/WTpooled1.043371
WT/WTpooled1.051851

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.093250.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018831
DC3000/delta hrp 6h1.037661
DC3000/delta hrp 12h1.012961
DC3000/delta hrp 24h1.045160.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.074530.11
DC3000 delta B/DC3000 delta AB1.053940.491

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.281820.254
Exp 36h1.348650.409
Exp 60h1.676660.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.981561
Var 0h0.902121
Var 12h I row2-row11.122930.204
Var 12h NI row2-row10.931970.713
Var 36h I row2-row10.86530.805
Var 36h NI row2-row10.931190.522
Var 60h I row2-row11.093871
Var 60h NI row2-row11.09440.904
Time course 0hI-0hNI1.053410.852
Time course 12hI-12hNI1.079030.633
Time course 36hI-36hNI1.133280.007
Time course 60hI-60hNI1.775570.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.84840.285
transgenic ySAMdc/azygous control (breaker)0.981321
transgenic ySAMdc/azygous control (red)1.015660.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.023540.119

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.641470.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.061520.307
Manapal/WT (break)0.777160.297
Manapal/WT (red)0.593090.181