Expression of 1-1-5.3.13.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.973250.76
27DAP/17DAP1.059060.88
39DAP/27DAP1.084560.787
41DAP/39DAP1.094430.649
42DAP/41DAP1.145870.702
43DAP/42DAP0.997620.937
47DAP/43DAP1.097940.474
52DAP/47DAP0.971180.907
57DAP/52DAP1.002761

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.046050.71
17DAP/reference0.959590.597
27DAP/reference0.916250.07
39DAP/reference0.975240.704
41DAP/reference1.020660.587
42DAP/reference1.120550.006
43DAP/reference1.024650.678
47DAP/reference1.065820.075
52DAP/reference1.121030.076
57DAP/reference1.150040.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.020110.749
27DAP/17DAP1.042610.893
39DAP/27DAP1.017170.751
41DAP/39DAP1.001631
42DAP/41DAP1.024130.795
43DAP/42DAP0.987460.801
47DAP/43DAP1.007790.963
52DAP/47DAP0.981690.905
57DAP/52DAP1.011181
57DAP/7DAP0.867681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.90471
17DAP/reference0.981980.447
27DAP/reference1.00770.974
39DAP/referenceN/AN/A
41DAP/reference1.054390.416
42DAP/reference1.01801
43DAP/reference1.055710.483
47DAP/reference0.91750.128
52DAP/reference1.055680.058
57DAP/reference1.060540.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0230.724
17DAP/reference0.99770.83
27DAP/reference0.979560.537
39DAP/reference0.963980.298
41DAP/reference0.939520.169
42DAP/reference1.014990.934
43DAP/reference1.025930.874
47DAP/reference1.049260.076
52DAP/reference0.937450.009
57DAP/reference1.041140.26

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.021630.793
17DAP/reference1.016780.824
27DAP/reference1.023580.447
39DAP/reference1.028190.353
41DAP/reference0.947350.459
42DAP/reference0.906760.014
43DAP/reference1.034770.655
47DAP/reference0.944920.296
52DAP/reference1.026740.801
57DAP/reference1.005790.954

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.077430.021
26DAP/20DAP0.9278
34DAP/26DAP0.895540.693
51DAP/34DAP0.966910.722
52DAP/51DAP1.038420.821
53DAP/52DAP1.010410.935
55DAP/53DAP0.972010.389
57DAP/55DAP1.041691
62DAP/57DAP1.099320.678
68DAP/62DAP1.101340.759
68DAP/14DAP1.35630.179

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.976010.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.191710.287
Mature Green Tomato/Ripe Tomato1.256610.632
Immature Eggplant/Mature Eggplant1.035171
Ripe Pepper/Ripe Tomato1.188321
Mature Eggplant/Ripe Tomato1.448321

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.930450.944
1-1-2/M821.003691
12-2/M820.985821
12-4/M821.01230.655
1-3/M820.975461
2-1-1/M820.768050.465
2-1/M820.871791
2-6/M820.972141
3-2/M820.96020.752
4-1-1/M821.006481
4-1/M820.704641
4-3-2/M820.923221
4-3/M820.9681
5-3/M820.992371
6-2/M820.951691
6-3/M821.103411
7-1/M821.049250.539
7-2/M820.902940.796
9-3-2/M820.82780.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.071041
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.82320.418
IL12-4/WTpooled1.093740.624
IL1-4/WTpooled0.996541
WT/WTpooled1.083531

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.434670.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.029610.921
DC3000/delta hrp 6h1.592011
DC3000/delta hrp 12h1.010181
DC3000/delta hrp 24h0.985840.988

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.058950.441
DC3000 delta B/DC3000 delta AB0.982240.961

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.094571

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001961
Var 0h0.605990.457
Var 12h I row2-row11.229470.204
Var 12h NI row2-row11.021581
Var 36h I row2-row11.061661
Var 36h NI row2-row10.898350.522
Var 60h I row2-row11.175691
Var 60h NI row2-row11.236060.904
Time course 0hI-0hNI1.066020.867
Time course 12hI-12hNI1.063510.741
Time course 36hI-36hNI1.011290.753
Time course 60hI-60hNI1.422120.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.961260.662
transgenic ySAMdc/azygous control (breaker)1.419880.248
transgenic ySAMdc/azygous control (red)1.433050.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.952870.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.117711

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.899211
Manapal/WT (break)1.243151
Manapal/WT (red)0.836540.187