Expression of 1-1-5.3.13.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97325 | 0.76 |
27DAP/17DAP | 1.05906 | 0.88 |
39DAP/27DAP | 1.08456 | 0.787 |
41DAP/39DAP | 1.09443 | 0.649 |
42DAP/41DAP | 1.14587 | 0.702 |
43DAP/42DAP | 0.99762 | 0.937 |
47DAP/43DAP | 1.09794 | 0.474 |
52DAP/47DAP | 0.97118 | 0.907 |
57DAP/52DAP | 1.00276 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04605 | 0.71 |
17DAP/reference | 0.95959 | 0.597 |
27DAP/reference | 0.91625 | 0.07 |
39DAP/reference | 0.97524 | 0.704 |
41DAP/reference | 1.02066 | 0.587 |
42DAP/reference | 1.12055 | 0.006 |
43DAP/reference | 1.02465 | 0.678 |
47DAP/reference | 1.06582 | 0.075 |
52DAP/reference | 1.12103 | 0.076 |
57DAP/reference | 1.15004 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02011 | 0.749 |
27DAP/17DAP | 1.04261 | 0.893 |
39DAP/27DAP | 1.01717 | 0.751 |
41DAP/39DAP | 1.00163 | 1 |
42DAP/41DAP | 1.02413 | 0.795 |
43DAP/42DAP | 0.98746 | 0.801 |
47DAP/43DAP | 1.00779 | 0.963 |
52DAP/47DAP | 0.98169 | 0.905 |
57DAP/52DAP | 1.01118 | 1 |
57DAP/7DAP | 0.86768 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90471 | |
17DAP/reference | 0.98198 | 0.447 |
27DAP/reference | 1.0077 | 0.974 |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.05439 | 0.416 |
42DAP/reference | 1.01801 | |
43DAP/reference | 1.05571 | 0.483 |
47DAP/reference | 0.9175 | 0.128 |
52DAP/reference | 1.05568 | 0.058 |
57DAP/reference | 1.06054 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.023 | 0.724 |
17DAP/reference | 0.9977 | 0.83 |
27DAP/reference | 0.97956 | 0.537 |
39DAP/reference | 0.96398 | 0.298 |
41DAP/reference | 0.93952 | 0.169 |
42DAP/reference | 1.01499 | 0.934 |
43DAP/reference | 1.02593 | 0.874 |
47DAP/reference | 1.04926 | 0.076 |
52DAP/reference | 0.93745 | 0.009 |
57DAP/reference | 1.04114 | 0.26 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02163 | 0.793 |
17DAP/reference | 1.01678 | 0.824 |
27DAP/reference | 1.02358 | 0.447 |
39DAP/reference | 1.02819 | 0.353 |
41DAP/reference | 0.94735 | 0.459 |
42DAP/reference | 0.90676 | 0.014 |
43DAP/reference | 1.03477 | 0.655 |
47DAP/reference | 0.94492 | 0.296 |
52DAP/reference | 1.02674 | 0.801 |
57DAP/reference | 1.00579 | 0.954 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07743 | 0.021 |
26DAP/20DAP | 0.9278 | |
34DAP/26DAP | 0.89554 | 0.693 |
51DAP/34DAP | 0.96691 | 0.722 |
52DAP/51DAP | 1.03842 | 0.821 |
53DAP/52DAP | 1.01041 | 0.935 |
55DAP/53DAP | 0.97201 | 0.389 |
57DAP/55DAP | 1.04169 | 1 |
62DAP/57DAP | 1.09932 | 0.678 |
68DAP/62DAP | 1.10134 | 0.759 |
68DAP/14DAP | 1.3563 | 0.179 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97601 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.19171 | 0.287 |
Mature Green Tomato/Ripe Tomato | 1.25661 | 0.632 |
Immature Eggplant/Mature Eggplant | 1.03517 | 1 |
Ripe Pepper/Ripe Tomato | 1.18832 | 1 |
Mature Eggplant/Ripe Tomato | 1.44832 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93045 | 0.944 |
1-1-2/M82 | 1.00369 | 1 |
12-2/M82 | 0.98582 | 1 |
12-4/M82 | 1.0123 | 0.655 |
1-3/M82 | 0.97546 | 1 |
2-1-1/M82 | 0.76805 | 0.465 |
2-1/M82 | 0.87179 | 1 |
2-6/M82 | 0.97214 | 1 |
3-2/M82 | 0.9602 | 0.752 |
4-1-1/M82 | 1.00648 | 1 |
4-1/M82 | 0.70464 | 1 |
4-3-2/M82 | 0.92322 | 1 |
4-3/M82 | 0.968 | 1 |
5-3/M82 | 0.99237 | 1 |
6-2/M82 | 0.95169 | 1 |
6-3/M82 | 1.10341 | 1 |
7-1/M82 | 1.04925 | 0.539 |
7-2/M82 | 0.90294 | 0.796 |
9-3-2/M82 | 0.8278 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.07104 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.8232 | 0.418 |
IL12-4/WTpooled | 1.09374 | 0.624 |
IL1-4/WTpooled | 0.99654 | 1 |
WT/WTpooled | 1.08353 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.43467 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02961 | 0.921 |
DC3000/delta hrp 6h | 1.59201 | 1 |
DC3000/delta hrp 12h | 1.01018 | 1 |
DC3000/delta hrp 24h | 0.98584 | 0.988 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05895 | 0.441 |
DC3000 delta B/DC3000 delta AB | 0.98224 | 0.961 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.09457 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00196 | 1 |
Var 0h | 0.60599 | 0.457 |
Var 12h I row2-row1 | 1.22947 | 0.204 |
Var 12h NI row2-row1 | 1.02158 | 1 |
Var 36h I row2-row1 | 1.06166 | 1 |
Var 36h NI row2-row1 | 0.89835 | 0.522 |
Var 60h I row2-row1 | 1.17569 | 1 |
Var 60h NI row2-row1 | 1.23606 | 0.904 |
Time course 0hI-0hNI | 1.06602 | 0.867 |
Time course 12hI-12hNI | 1.06351 | 0.741 |
Time course 36hI-36hNI | 1.01129 | 0.753 |
Time course 60hI-60hNI | 1.42212 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96126 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 1.41988 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.43305 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95287 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.11771 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89921 | 1 |
Manapal/WT (break) | 1.24315 | 1 |
Manapal/WT (red) | 0.83654 | 0.187 |
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