Expression of 1-1-5.3.15.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.033750.891
27DAP/17DAP0.97480.939
39DAP/27DAP0.995060.719
41DAP/39DAP1.254690.642
42DAP/41DAP1.033011
43DAP/42DAP0.89810.822
47DAP/43DAP1.371440.668
52DAP/47DAP0.828310.543
57DAP/52DAP1.021360.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.993240.727
17DAP/reference0.712380.069
27DAP/reference0.983770.668
39DAP/reference0.751210.178
41DAP/reference0.59490.016
42DAP/reference0.913550.145
43DAP/reference1.034980.382
47DAP/reference1.020390.568
52DAP/reference1.470220.011
57DAP/reference1.361470.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.259390.65
27DAP/17DAP1.016250.98
39DAP/27DAP1.022581
41DAP/39DAP1.148670.407
42DAP/41DAP1.246970.006
43DAP/42DAP0.957350.665
47DAP/43DAP0.91350.701
52DAP/47DAP1.032840.979
57DAP/52DAP0.883740.605
57DAP/7DAP1.120171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036171
17DAP/reference0.96680.447
27DAP/reference1.184660.131
39DAP/reference1.156570.511
41DAP/reference1.198850.066
42DAP/reference1.024220.828
43DAP/reference0.971050.44
47DAP/reference0.767690.168
52DAP/reference0.901090.278
57DAP/reference0.971930.458

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.20606
17DAP/reference1.022141
27DAP/reference1.100561
39DAP/reference1.111150.037
41DAP/reference1.107970.862
42DAP/reference1.022341
43DAP/reference0.920340.314
47DAP/reference0.715040.012
52DAP/reference1.189460.018
57DAP/reference0.820350.208

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080460.433
17DAP/reference1.039681
27DAP/reference0.926710.257
39DAP/reference1.016890.889
41DAP/reference1.174670.265
42DAP/reference1.11281
43DAP/reference1.116620.744
47DAP/reference1.068851
52DAP/reference1.11710.534
57DAP/reference1.827170.214

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.056671
26DAP/20DAP1.037261
34DAP/26DAP1.11391
51DAP/34DAP1.135540.936
52DAP/51DAP2.280650.304
53DAP/52DAP0.5262
55DAP/53DAP1.197330.885
57DAP/55DAP0.3180.019
62DAP/57DAP1.707680.069
68DAP/62DAP4.290250.025
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.578150.037

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.198450.113
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.853160.176
Ripe Pepper/Ripe Tomato1.085421
Mature Eggplant/Ripe Tomato1.73171

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.00781
1-1-2/M820.955611
12-2/M820.987111
12-4/M821.0248
1-3/M821.003271
2-1-1/M821.137040.422
2-1/M820.94777
2-6/M821.037111
3-2/M820.9876
4-1-1/M820.951261
4-1/M82N/AN/A
4-3-2/M821.17751
4-3/M821.083021
5-3/M821.032311
6-2/M820.961081
6-3/M820.930291
7-1/M82N/AN/A
7-2/M820.987831
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.79276
IL12-4/WTpooled0.877291
IL1-4/WTpooled0.822360.699
WT/WTpooled0.969321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.06892

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993141
DC3000/delta hrp 6h1.023730.95
DC3000/delta hrp 12h1.03161
DC3000/delta hrp 24h1.053680.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.768640.724
DC3000 delta B/DC3000 delta AB0.773170.045

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.931531
Exp 36h0.92540.699
Exp 60h1.046791

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.8285
Var 0h0.930841
Var 12h I row2-row10.980330.948
Var 12h NI row2-row11.713931
Var 36h I row2-row11.056691
Var 36h NI row2-row12.25243
Var 60h I row2-row10.914350.952
Var 60h NI row2-row11.374410.904
Time course 0hI-0hNI0.864420.28
Time course 12hI-12hNI1.067690.824
Time course 36hI-36hNI0.691250.049
Time course 60hI-60hNI0.450740.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.991140.722
transgenic ySAMdc/azygous control (breaker)1.200840.248
transgenic ySAMdc/azygous control (red)1.319360.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.971410.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.085761

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.098530.307
Manapal/WT (break)1.048571
Manapal/WT (red)1.155090.413