Expression of 1-1-5.3.16.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.115130.014
27DAP/17DAP0.741970.354
39DAP/27DAP0.914890.641
41DAP/39DAP0.877320.512
42DAP/41DAP0.730070.774
43DAP/42DAP0.887050.801
47DAP/43DAP0.943050.746
52DAP/47DAP1.53370.425
57DAP/52DAP1.09240.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.715650.008
17DAP/reference0.357220.009
27DAP/reference0.452710.023
39DAP/reference0.476860.027
41DAP/reference0.434540.014
42DAP/reference0.575850.003
43DAP/reference0.707250.118
47DAP/reference0.565640.002
52DAP/reference0.60950.065
57DAP/reference0.864020.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.031360.016
27DAP/17DAP0.737430.446
39DAP/27DAP0.794460.367
41DAP/39DAP1.357390.663
42DAP/41DAP0.916010.556
43DAP/42DAP1.512660.23
47DAP/43DAP0.707960.229
52DAP/47DAP0.948010.902
57DAP/52DAP1.092540.759
57DAP/7DAP0.087180.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.310830.613
17DAP/reference0.361870.011
27DAP/reference0.418840.01
39DAP/reference0.461260.011
41DAP/reference0.571340.034
42DAP/reference0.600180.013
43DAP/reference0.405620.011
47DAP/reference0.320130.026
52DAP/reference0.369570.012
57DAP/reference0.27030.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.27910.162
17DAP/reference0.42930.006
27DAP/reference0.475920.012
39DAP/reference0.415130.018
41DAP/reference0.414350.013
42DAP/reference0.453470.015
43DAP/reference0.362230.003
47DAP/reference0.450890.01
52DAP/reference0.261220.003
57DAP/reference0.287740.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.633040.775
17DAP/reference0.57120.097
27DAP/reference0.327510.023
39DAP/reference0.331930.007
41DAP/reference0.46240.019
42DAP/reference0.577940.036
43DAP/reference0.585650.037
47DAP/reference0.264720.004
52DAP/reference0.356050.047
57DAP/reference0.631040.029

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.671260.399
26DAP/20DAP0.866461
34DAP/26DAP1.090521
51DAP/34DAP1.122160.957
52DAP/51DAP0.920671
53DAP/52DAP1.601020.022
55DAP/53DAP0.82398
57DAP/55DAP0.894780.539
62DAP/57DAP1.173410.622
68DAP/62DAP1.070240.939
68DAP/14DAP1.401420.108

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.700820.129

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.399340.081
Mature Green Tomato/Ripe Tomato3.533840.237
Immature Eggplant/Mature Eggplant3.434220.05
Ripe Pepper/Ripe Tomato10.62940.233
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.022561
IL2-6/WTpooled0.996810.348
IL7-5/WTpooled1.662070.75
IL7-3/WTpooled0.999741
IL12-4/WTpooled0.970751
IL1-4/WTpooled1.111341
WT/WTpooled0.964181

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.013581

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.99226
DC3000/delta hrp 6h1.180931
DC3000/delta hrp 12h1.070431
DC3000/delta hrp 24h1.396150.051

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.110411
Exp 36h1.930850.693
Exp 60h0.999980.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.054091
Var 0h1.198980.421
Var 12h I row2-row12.800760.406
Var 12h NI row2-row11.210730.235
Var 36h I row2-row11.0171
Var 36h NI row2-row11.513361
Var 60h I row2-row10.888260.306
Var 60h NI row2-row11.078561
Time course 0hI-0hNI0.94010.665
Time course 12hI-12hNI1.547360.006
Time course 36hI-36hNI1.627670.166
Time course 60hI-60hNI3.079660.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.888040.377
transgenic ySAMdc/azygous control (breaker)1.241511
transgenic ySAMdc/azygous control (red)0.974431

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.991410.673

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.827990.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.054681
Manapal/WT (break)1.127971
Manapal/WT (red)1.075581