Expression of 1-1-5.3.16.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.11513 | 0.014 |
27DAP/17DAP | 0.74197 | 0.354 |
39DAP/27DAP | 0.91489 | 0.641 |
41DAP/39DAP | 0.87732 | 0.512 |
42DAP/41DAP | 0.73007 | 0.774 |
43DAP/42DAP | 0.88705 | 0.801 |
47DAP/43DAP | 0.94305 | 0.746 |
52DAP/47DAP | 1.5337 | 0.425 |
57DAP/52DAP | 1.0924 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.71565 | 0.008 |
17DAP/reference | 0.35722 | 0.009 |
27DAP/reference | 0.45271 | 0.023 |
39DAP/reference | 0.47686 | 0.027 |
41DAP/reference | 0.43454 | 0.014 |
42DAP/reference | 0.57585 | 0.003 |
43DAP/reference | 0.70725 | 0.118 |
47DAP/reference | 0.56564 | 0.002 |
52DAP/reference | 0.6095 | 0.065 |
57DAP/reference | 0.86402 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.03136 | 0.016 |
27DAP/17DAP | 0.73743 | 0.446 |
39DAP/27DAP | 0.79446 | 0.367 |
41DAP/39DAP | 1.35739 | 0.663 |
42DAP/41DAP | 0.91601 | 0.556 |
43DAP/42DAP | 1.51266 | 0.23 |
47DAP/43DAP | 0.70796 | 0.229 |
52DAP/47DAP | 0.94801 | 0.902 |
57DAP/52DAP | 1.09254 | 0.759 |
57DAP/7DAP | 0.08718 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31083 | 0.613 |
17DAP/reference | 0.36187 | 0.011 |
27DAP/reference | 0.41884 | 0.01 |
39DAP/reference | 0.46126 | 0.011 |
41DAP/reference | 0.57134 | 0.034 |
42DAP/reference | 0.60018 | 0.013 |
43DAP/reference | 0.40562 | 0.011 |
47DAP/reference | 0.32013 | 0.026 |
52DAP/reference | 0.36957 | 0.012 |
57DAP/reference | 0.2703 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.2791 | 0.162 |
17DAP/reference | 0.4293 | 0.006 |
27DAP/reference | 0.47592 | 0.012 |
39DAP/reference | 0.41513 | 0.018 |
41DAP/reference | 0.41435 | 0.013 |
42DAP/reference | 0.45347 | 0.015 |
43DAP/reference | 0.36223 | 0.003 |
47DAP/reference | 0.45089 | 0.01 |
52DAP/reference | 0.26122 | 0.003 |
57DAP/reference | 0.28774 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.63304 | 0.775 |
17DAP/reference | 0.5712 | 0.097 |
27DAP/reference | 0.32751 | 0.023 |
39DAP/reference | 0.33193 | 0.007 |
41DAP/reference | 0.4624 | 0.019 |
42DAP/reference | 0.57794 | 0.036 |
43DAP/reference | 0.58565 | 0.037 |
47DAP/reference | 0.26472 | 0.004 |
52DAP/reference | 0.35605 | 0.047 |
57DAP/reference | 0.63104 | 0.029 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.67126 | 0.399 |
26DAP/20DAP | 0.86646 | 1 |
34DAP/26DAP | 1.09052 | 1 |
51DAP/34DAP | 1.12216 | 0.957 |
52DAP/51DAP | 0.92067 | 1 |
53DAP/52DAP | 1.60102 | 0.022 |
55DAP/53DAP | 0.82398 | |
57DAP/55DAP | 0.89478 | 0.539 |
62DAP/57DAP | 1.17341 | 0.622 |
68DAP/62DAP | 1.07024 | 0.939 |
68DAP/14DAP | 1.40142 | 0.108 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.70082 | 0.129 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.39934 | 0.081 |
Mature Green Tomato/Ripe Tomato | 3.53384 | 0.237 |
Immature Eggplant/Mature Eggplant | 3.43422 | 0.05 |
Ripe Pepper/Ripe Tomato | 10.6294 | 0.233 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02256 | 1 |
IL2-6/WTpooled | 0.99681 | 0.348 |
IL7-5/WTpooled | 1.66207 | 0.75 |
IL7-3/WTpooled | 0.99974 | 1 |
IL12-4/WTpooled | 0.97075 | 1 |
IL1-4/WTpooled | 1.11134 | 1 |
WT/WTpooled | 0.96418 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01358 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99226 | |
DC3000/delta hrp 6h | 1.18093 | 1 |
DC3000/delta hrp 12h | 1.07043 | 1 |
DC3000/delta hrp 24h | 1.39615 | 0.051 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.11041 | 1 |
Exp 36h | 1.93085 | 0.693 |
Exp 60h | 0.99998 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05409 | 1 |
Var 0h | 1.19898 | 0.421 |
Var 12h I row2-row1 | 2.80076 | 0.406 |
Var 12h NI row2-row1 | 1.21073 | 0.235 |
Var 36h I row2-row1 | 1.017 | 1 |
Var 36h NI row2-row1 | 1.51336 | 1 |
Var 60h I row2-row1 | 0.88826 | 0.306 |
Var 60h NI row2-row1 | 1.07856 | 1 |
Time course 0hI-0hNI | 0.9401 | 0.665 |
Time course 12hI-12hNI | 1.54736 | 0.006 |
Time course 36hI-36hNI | 1.62767 | 0.166 |
Time course 60hI-60hNI | 3.07966 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88804 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 1.24151 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97443 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99141 | 0.673 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82799 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.05468 | 1 |
Manapal/WT (break) | 1.12797 | 1 |
Manapal/WT (red) | 1.07558 | 1 |
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