Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.3.16.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.24013	0.561
27DAP/17DAP	1.06145	0.754
39DAP/27DAP	0.99984	0.719
41DAP/39DAP	0.65249	0.087
42DAP/41DAP	0.84243	1
43DAP/42DAP	1.19083	1
47DAP/43DAP	0.39017	0.049
52DAP/47DAP	0.77033	0.554
57DAP/52DAP	0.97166	0.956

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.97149	0.432
17DAP/reference	0.51666	0.005
27DAP/reference	0.66097	0.129
39DAP/reference	0.35659	0.012
41DAP/reference	0.42517	0.008
42DAP/reference	0.47397	0.001
43DAP/reference	0.42526	0.018
47DAP/reference	0.52782	0.013
52DAP/reference	0.31347	0.013
57DAP/reference	0.56873	0.019

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.7634
27DAP/17DAP	N/A	N/A
39DAP/27DAP	0.86902	0.382
41DAP/39DAP	0.45027
42DAP/41DAP	1.34615	0.208
43DAP/42DAP	1.92375	0.013
47DAP/43DAP	0.92455	0.833
52DAP/47DAP	1.156	1
57DAP/52DAP	N/A	N/A
57DAP/7DAP	0.81861	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.70108	0.058
17DAP/reference	N/A	N/A
27DAP/reference	0.98038
39DAP/reference	0.89646
41DAP/reference	0.68502	0.235
42DAP/reference	0.72118	0.05
43DAP/reference	0.93461
47DAP/reference	0.48273	0.057
52DAP/reference	0.21186
57DAP/reference	1.17977

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.58478	0.134
17DAP/reference	0.66743	0.092
27DAP/reference	0.59443	0.056
39DAP/reference	0.51944	0.019
41DAP/reference	1.0023	0.364
42DAP/reference	0.37083
43DAP/reference	0.52452	0.051
47DAP/reference	0.41565	0.062
52DAP/reference	0.40155	0.004
57DAP/reference	0.26356	0.002

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.52349	0.036
17DAP/reference	1.76795	0.067
27DAP/reference	1.00861
39DAP/reference	0.79547	0.36
41DAP/reference	0.85199
42DAP/reference	0.706
43DAP/reference	0.64977	0.048
47DAP/reference	0.51643	0.009
52DAP/reference	0.43863	0.08
57DAP/reference	0.85981	0.258

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.22155	0.966
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.55424
51DAP/34DAP	2.23348	0.387
52DAP/51DAP	N/A	N/A
53DAP/52DAP	1.02729	0.91
55DAP/53DAP	0.90537	0.838
57DAP/55DAP	N/A	N/A
62DAP/57DAP	1.14882
68DAP/62DAP	1.89428
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	1.04138
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	0.9923	1
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.05202	1
IL12-4/WTpooled	1.13687	0.737
IL1-4/WTpooled	0.83298
WT/WTpooled	0.95922	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.09002	0.936
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.41141	0.07

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A