Expression of 1-1-5.3.18.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91509 | 0.551 |
27DAP/17DAP | 1.49659 | 0.646 |
39DAP/27DAP | 0.90121 | 0.749 |
41DAP/39DAP | 1.12851 | 0.833 |
42DAP/41DAP | 1.91507 | 0.18 |
43DAP/42DAP | 0.79772 | 0.613 |
47DAP/43DAP | 0.87293 | 0.568 |
52DAP/47DAP | 1.68881 | 0.307 |
57DAP/52DAP | 0.93784 | 0.926 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01285 | 0.824 |
17DAP/reference | 0.74383 | 0.008 |
27DAP/reference | 0.96038 | 0.514 |
39DAP/reference | 0.82805 | 0.068 |
41DAP/reference | 0.77693 | 0.008 |
42DAP/reference | 1.12212 | 0.467 |
43DAP/reference | 0.83506 | 0.036 |
47DAP/reference | 1.02662 | 1 |
52DAP/reference | 1.32547 | 0.048 |
57DAP/reference | 1.13394 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80233 | 0.116 |
27DAP/17DAP | 1.27412 | 0.207 |
39DAP/27DAP | 1.01763 | 1 |
41DAP/39DAP | 1.10107 | 0.727 |
42DAP/41DAP | 0.88696 | 0.25 |
43DAP/42DAP | 1.26709 | 0.086 |
47DAP/43DAP | 1.04704 | 0.833 |
52DAP/47DAP | 1.31241 | 0.28 |
57DAP/52DAP | 1.53333 | 0.061 |
57DAP/7DAP | 1.60013 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86327 | 0.1 |
17DAP/reference | 0.80888 | 0.015 |
27DAP/reference | 0.82775 | 0.01 |
39DAP/reference | 0.82562 | 0.064 |
41DAP/reference | 0.78891 | 0.025 |
42DAP/reference | 0.82872 | 0.012 |
43DAP/reference | 0.97992 | 0.502 |
47DAP/reference | 0.86088 | 0.168 |
52DAP/reference | 0.79864 | 0.027 |
57DAP/reference | 0.87515 | 0.022 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70708 | 0.008 |
17DAP/reference | 0.79232 | 0.05 |
27DAP/reference | 0.83331 | 0.16 |
39DAP/reference | 1.04363 | 1 |
41DAP/reference | 1.09482 | 0.536 |
42DAP/reference | 1.10715 | 0.267 |
43DAP/reference | 1.11696 | 0.362 |
47DAP/reference | 0.90773 | 0.048 |
52DAP/reference | 0.9533 | 0.5 |
57DAP/reference | 0.90517 | 0.298 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78477 | 0.047 |
17DAP/reference | 0.87965 | 0.234 |
27DAP/reference | 1.15095 | 1 |
39DAP/reference | 0.82384 | 0.012 |
41DAP/reference | 0.8036 | 0.037 |
42DAP/reference | 0.91024 | 0.361 |
43DAP/reference | 1.11644 | 0.608 |
47DAP/reference | 1.02135 | 1 |
52DAP/reference | 0.84029 | 0.247 |
57DAP/reference | 1.29159 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.70787 | 0.545 |
26DAP/20DAP | 0.82262 | 0.512 |
34DAP/26DAP | 1.03601 | 1 |
51DAP/34DAP | 1.06714 | 0.597 |
52DAP/51DAP | 0.95679 | 1 |
53DAP/52DAP | 1.06996 | 0.697 |
55DAP/53DAP | 1.15789 | 0.477 |
57DAP/55DAP | 0.99522 | 0.93 |
62DAP/57DAP | 0.87352 | 0.05 |
68DAP/62DAP | 0.94542 | 0.747 |
68DAP/14DAP | 2.21869 | 0.084 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.13471 | 0.246 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72797 | 0.217 |
Mature Green Tomato/Ripe Tomato | 0.15695 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.20333 | 0.096 |
Ripe Pepper/Ripe Tomato | 0.57372 | 1 |
Mature Eggplant/Ripe Tomato | 0.51328 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00002 | 1 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.98504 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.9716 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.21996 | |
4-1/M82 | 1.21431 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.67937 | 0.374 |
5-3/M82 | 0.86389 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.20388 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.01257 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.67947 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.7982 | |
WT/WTpooled | 1.06309 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.26358 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9077 | 1 |
DC3000/delta hrp 6h | 1.09724 | 1 |
DC3000/delta hrp 12h | 1.01798 | 1 |
DC3000/delta hrp 24h | 1.12025 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.23771 | |
DC3000 delta B/DC3000 delta AB | 1.08165 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.13686 | 1 |
Exp 36h | 1.23949 | 0.693 |
Exp 60h | 1.20093 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04532 | 1 |
Var 0h | 0.91429 | 0.933 |
Var 12h I row2-row1 | 1.24894 | 0.235 |
Var 12h NI row2-row1 | 0.87697 | 0.494 |
Var 36h I row2-row1 | 0.93222 | 1 |
Var 36h NI row2-row1 | 1.38003 | 1 |
Var 60h I row2-row1 | 1.17071 | 0.562 |
Var 60h NI row2-row1 | 1.09054 | 0.904 |
Time course 0hI-0hNI | 1.10216 | 0.852 |
Time course 12hI-12hNI | 1.04945 | 0.774 |
Time course 36hI-36hNI | 1.07354 | 0.101 |
Time course 60hI-60hNI | 1.41349 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94805 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 0.80144 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.95324 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04639 | 0.045 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.67358 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98501 | 1 |
Manapal/WT (break) | 0.9733 | 1 |
Manapal/WT (red) | 0.83127 | 0.188 |
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