Expression of 1-1-5.3.18.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.915090.551
27DAP/17DAP1.496590.646
39DAP/27DAP0.901210.749
41DAP/39DAP1.128510.833
42DAP/41DAP1.915070.18
43DAP/42DAP0.797720.613
47DAP/43DAP0.872930.568
52DAP/47DAP1.688810.307
57DAP/52DAP0.937840.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.012850.824
17DAP/reference0.743830.008
27DAP/reference0.960380.514
39DAP/reference0.828050.068
41DAP/reference0.776930.008
42DAP/reference1.122120.467
43DAP/reference0.835060.036
47DAP/reference1.026621
52DAP/reference1.325470.048
57DAP/reference1.133940.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.802330.116
27DAP/17DAP1.274120.207
39DAP/27DAP1.017631
41DAP/39DAP1.101070.727
42DAP/41DAP0.886960.25
43DAP/42DAP1.267090.086
47DAP/43DAP1.047040.833
52DAP/47DAP1.312410.28
57DAP/52DAP1.533330.061
57DAP/7DAP1.600130.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.863270.1
17DAP/reference0.808880.015
27DAP/reference0.827750.01
39DAP/reference0.825620.064
41DAP/reference0.788910.025
42DAP/reference0.828720.012
43DAP/reference0.979920.502
47DAP/reference0.860880.168
52DAP/reference0.798640.027
57DAP/reference0.875150.022

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.707080.008
17DAP/reference0.792320.05
27DAP/reference0.833310.16
39DAP/reference1.043631
41DAP/reference1.094820.536
42DAP/reference1.107150.267
43DAP/reference1.116960.362
47DAP/reference0.907730.048
52DAP/reference0.95330.5
57DAP/reference0.905170.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.784770.047
17DAP/reference0.879650.234
27DAP/reference1.150951
39DAP/reference0.823840.012
41DAP/reference0.80360.037
42DAP/reference0.910240.361
43DAP/reference1.116440.608
47DAP/reference1.021351
52DAP/reference0.840290.247
57DAP/reference1.291590.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.707870.545
26DAP/20DAP0.822620.512
34DAP/26DAP1.036011
51DAP/34DAP1.067140.597
52DAP/51DAP0.956791
53DAP/52DAP1.069960.697
55DAP/53DAP1.157890.477
57DAP/55DAP0.995220.93
62DAP/57DAP0.873520.05
68DAP/62DAP0.945420.747
68DAP/14DAP2.218690.084

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.134710.246

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.727970.217
Mature Green Tomato/Ripe Tomato0.156950.017
Immature Eggplant/Mature Eggplant1.203330.096
Ripe Pepper/Ripe Tomato0.573721
Mature Eggplant/Ripe Tomato0.513281

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.000021
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.98504
1-3/M82N/AN/A
2-1-1/M820.9716
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M821.21996
4-1/M821.21431
4-3-2/M82N/AN/A
4-3/M820.679370.374
5-3/M820.863891
6-2/M82N/AN/A
6-3/M821.20388
7-1/M82N/AN/A
7-2/M821.01257
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.67947
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.7982
WT/WTpooled1.06309

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.263580.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.90771
DC3000/delta hrp 6h1.097241
DC3000/delta hrp 12h1.017981
DC3000/delta hrp 24h1.120250.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.23771
DC3000 delta B/DC3000 delta AB1.08165

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.136861
Exp 36h1.239490.693
Exp 60h1.200930.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.045321
Var 0h0.914290.933
Var 12h I row2-row11.248940.235
Var 12h NI row2-row10.876970.494
Var 36h I row2-row10.932221
Var 36h NI row2-row11.380031
Var 60h I row2-row11.170710.562
Var 60h NI row2-row11.090540.904
Time course 0hI-0hNI1.102160.852
Time course 12hI-12hNI1.049450.774
Time course 36hI-36hNI1.073540.101
Time course 60hI-60hNI1.413490.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.948050.391
transgenic ySAMdc/azygous control (breaker)0.801440.173
transgenic ySAMdc/azygous control (red)0.953241

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.046390.045

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.673580.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.985011
Manapal/WT (break)0.97331
Manapal/WT (red)0.831270.188