Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.3.18.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.4108	0.588
27DAP/17DAP	1.34815	0.717
39DAP/27DAP	1.18783	0.67
41DAP/39DAP	0.59136	0.119
42DAP/41DAP	0.61882	0.774
43DAP/42DAP	1.08073	0.937
47DAP/43DAP	1.15751	0.693
52DAP/47DAP	1.56612	0.414
57DAP/52DAP	1.39074	1

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.54121	0.025
17DAP/reference	0.60568	0.025
27DAP/reference	0.71975	0.134
39DAP/reference	1.19848	0.169
41DAP/reference	0.50553	0.011
42DAP/reference	0.68323	0.004
43DAP/reference	0.86875	0.691
47DAP/reference	0.59297	0.001
52DAP/reference	0.66993	0.027
57DAP/reference	0.8293	0.503

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.26623
27DAP/17DAP	1.0284
39DAP/27DAP	4.93022
41DAP/39DAP	6.23783
42DAP/41DAP	1.68621	0.571
43DAP/42DAP	1.10734	0.699
47DAP/43DAP	1.00018	0.939
52DAP/47DAP	2.21819	0.354
57DAP/52DAP	0.92522	0.705
57DAP/7DAP	1.89761

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	1.2258	0.032
27DAP/reference	1.43651	0.018
39DAP/reference	0.84658	0.411
41DAP/reference	0.7309	0.009
42DAP/reference	2.1834
43DAP/reference	N/A	N/A
47DAP/reference	0.70567	0.168
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.70025	0.152
17DAP/reference	0.62184	0.095
27DAP/reference	0.73909	0.257
39DAP/reference	0.80093	0.339
41DAP/reference	0.93645	0.557
42DAP/reference	0.55323	0.289
43DAP/reference	0.72863	0.32
47DAP/reference	1.00642	1
52DAP/reference	0.35818	0.009
57DAP/reference	0.55854	0.02

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.45653	0.016
17DAP/reference	1.48579
27DAP/reference	0.90758
39DAP/reference	0.71188
41DAP/reference	1.21754	0.296
42DAP/reference	1.25446	0.099
43DAP/reference	1.48121	0.032
47DAP/reference	0.48396	0.005
52DAP/reference	N/A	N/A
57DAP/reference	1.04111	0.491

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.75313	0.182
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.63529
51DAP/34DAP	0.55534	0.13
52DAP/51DAP	1.26392	0.481
53DAP/52DAP	1.98495	0.608
55DAP/53DAP	1.4876	0.781
57DAP/55DAP	2.35054	0.114
62DAP/57DAP	1.3277	0.445
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	0.6368
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.00283	1
IL2-6/WTpooled	1.18245	0.395
IL7-5/WTpooled	1.29835	0.792
IL7-3/WTpooled	1.08175	1
IL12-4/WTpooled	0.96473	1
IL1-4/WTpooled	1.02988
WT/WTpooled	1.03907	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	1.10504	0.95
DC3000/delta hrp 12h	1.5879	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.944	1
Exp 36h	0.78272	0.623
Exp 60h	0.59666	0.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.04996	0.98
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A