Expression of 1-1-5.3.18.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.792310.125
27DAP/17DAP0.931220.898
39DAP/27DAP1.463420.53
41DAP/39DAP0.891540.558
42DAP/41DAP0.834110.774
43DAP/42DAP0.882120.827
47DAP/43DAP0.908890.687
52DAP/47DAP1.247190.93
57DAP/52DAP1.264440.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.935060.277
17DAP/reference1.049180.33
27DAP/reference0.97810.61
39DAP/reference0.934750.194
41DAP/reference0.971410.542
42DAP/reference0.912340.033
43DAP/reference0.983130.708
47DAP/reference0.941050.06
52DAP/reference0.904010.215
57DAP/reference0.848760.078

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.095220.923
27DAP/17DAP0.971030.782
39DAP/27DAP1.004930.874
41DAP/39DAP1.575140.012
42DAP/41DAP0.927310.511
43DAP/42DAP0.866830.308
47DAP/43DAP1.037070.914
52DAP/47DAP0.966570.884
57DAP/52DAP0.974260.705
57DAP/7DAP0.927731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.202680.213
17DAP/reference1.312630.112
27DAP/reference1.026660.453
39DAP/reference1.147730.601
41DAP/reference1.316220.223
42DAP/reference1.261470.308
43DAP/reference1.722290.014
47DAP/reference1.384520.102
52DAP/reference1.301690.048
57DAP/reference1.330030.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.949320.374
17DAP/reference0.890510.05
27DAP/reference0.905910.203
39DAP/reference0.954160.281
41DAP/reference0.93750.205
42DAP/reference0.877870.012
43DAP/reference0.873950.175
47DAP/reference0.920870.137
52DAP/reference0.92430.072
57DAP/reference1.027480.64

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.119760.709
17DAP/reference1.102140.833
27DAP/reference1.333130.052
39DAP/reference1.093630.546
41DAP/reference1.062580.674
42DAP/reference0.95610.552
43DAP/reference0.786210.137
47DAP/reference1.061440.48
52DAP/reference1.142730.583
57DAP/reference0.940740.353

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.037590.966
26DAP/20DAP0.779480.317
34DAP/26DAP0.995011
51DAP/34DAP0.739440.376
52DAP/51DAP1.09960.742
53DAP/52DAP1.24130.319
55DAP/53DAP1.079760.994
57DAP/55DAP1.160720.881
62DAP/57DAP1.093721
68DAP/62DAP1.122740.936
68DAP/14DAP1.009381

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.25050.527

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.371330.106
Mature Green Tomato/Ripe Tomato1.17642
Immature Eggplant/Mature Eggplant1.722610.05
Ripe Pepper/Ripe Tomato3.961741
Mature Eggplant/Ripe Tomato1.516091

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.115970.877
1-1-2/M821.092011
12-2/M821.071611
12-4/M821.150371
1-3/M820.767580.501
2-1-1/M821.040181
2-1/M821.246830.335
2-6/M821.022851
3-2/M820.92086
4-1-1/M820.845660.668
4-1/M820.95094
4-3-2/M821.07186
4-3/M821.052581
5-3/M820.951711
6-2/M821.04171
6-3/M820.976081
7-1/M82N/AN/A
7-2/M821.056391
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.254990.277
IL2-6/WTpooled0.903941
IL7-5/WTpooled0.715790.559
IL7-3/WTpooled0.946021
IL12-4/WTpooled1.074720.839
IL1-4/WTpooled0.745190.444
WT/WTpooled1.032941

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.948081

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.945671
DC3000/delta hrp 6h1.190341
DC3000/delta hrp 12h1.16761
DC3000/delta hrp 24h1.160370.182

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.500850.044
DC3000 delta B/DC3000 delta AB1.354510.087

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.248511
Exp 36h1.028331
Exp 60h1.23350.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.044441
Var 0h1.099630.98
Var 12h I row2-row11.16750.324
Var 12h NI row2-row11.073620.649
Var 36h I row2-row11.244730.742
Var 36h NI row2-row10.974680.852
Var 60h I row2-row10.665390.293
Var 60h NI row2-row10.808720.302
Time course 0hI-0hNI1.158480.182
Time course 12hI-12hNI0.97440.82
Time course 36hI-36hNI1.320370.005
Time course 60hI-60hNI2.360410.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.90020.428
transgenic ySAMdc/azygous control (breaker)0.833120.251
transgenic ySAMdc/azygous control (red)1.049521

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.00970.723

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.014861

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.774210.183