Expression of 1-1-5.3.18.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79231 | 0.125 |
27DAP/17DAP | 0.93122 | 0.898 |
39DAP/27DAP | 1.46342 | 0.53 |
41DAP/39DAP | 0.89154 | 0.558 |
42DAP/41DAP | 0.83411 | 0.774 |
43DAP/42DAP | 0.88212 | 0.827 |
47DAP/43DAP | 0.90889 | 0.687 |
52DAP/47DAP | 1.24719 | 0.93 |
57DAP/52DAP | 1.26444 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93506 | 0.277 |
17DAP/reference | 1.04918 | 0.33 |
27DAP/reference | 0.9781 | 0.61 |
39DAP/reference | 0.93475 | 0.194 |
41DAP/reference | 0.97141 | 0.542 |
42DAP/reference | 0.91234 | 0.033 |
43DAP/reference | 0.98313 | 0.708 |
47DAP/reference | 0.94105 | 0.06 |
52DAP/reference | 0.90401 | 0.215 |
57DAP/reference | 0.84876 | 0.078 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09522 | 0.923 |
27DAP/17DAP | 0.97103 | 0.782 |
39DAP/27DAP | 1.00493 | 0.874 |
41DAP/39DAP | 1.57514 | 0.012 |
42DAP/41DAP | 0.92731 | 0.511 |
43DAP/42DAP | 0.86683 | 0.308 |
47DAP/43DAP | 1.03707 | 0.914 |
52DAP/47DAP | 0.96657 | 0.884 |
57DAP/52DAP | 0.97426 | 0.705 |
57DAP/7DAP | 0.92773 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20268 | 0.213 |
17DAP/reference | 1.31263 | 0.112 |
27DAP/reference | 1.02666 | 0.453 |
39DAP/reference | 1.14773 | 0.601 |
41DAP/reference | 1.31622 | 0.223 |
42DAP/reference | 1.26147 | 0.308 |
43DAP/reference | 1.72229 | 0.014 |
47DAP/reference | 1.38452 | 0.102 |
52DAP/reference | 1.30169 | 0.048 |
57DAP/reference | 1.33003 | 0.117 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94932 | 0.374 |
17DAP/reference | 0.89051 | 0.05 |
27DAP/reference | 0.90591 | 0.203 |
39DAP/reference | 0.95416 | 0.281 |
41DAP/reference | 0.9375 | 0.205 |
42DAP/reference | 0.87787 | 0.012 |
43DAP/reference | 0.87395 | 0.175 |
47DAP/reference | 0.92087 | 0.137 |
52DAP/reference | 0.9243 | 0.072 |
57DAP/reference | 1.02748 | 0.64 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11976 | 0.709 |
17DAP/reference | 1.10214 | 0.833 |
27DAP/reference | 1.33313 | 0.052 |
39DAP/reference | 1.09363 | 0.546 |
41DAP/reference | 1.06258 | 0.674 |
42DAP/reference | 0.9561 | 0.552 |
43DAP/reference | 0.78621 | 0.137 |
47DAP/reference | 1.06144 | 0.48 |
52DAP/reference | 1.14273 | 0.583 |
57DAP/reference | 0.94074 | 0.353 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03759 | 0.966 |
26DAP/20DAP | 0.77948 | 0.317 |
34DAP/26DAP | 0.99501 | 1 |
51DAP/34DAP | 0.73944 | 0.376 |
52DAP/51DAP | 1.0996 | 0.742 |
53DAP/52DAP | 1.2413 | 0.319 |
55DAP/53DAP | 1.07976 | 0.994 |
57DAP/55DAP | 1.16072 | 0.881 |
62DAP/57DAP | 1.09372 | 1 |
68DAP/62DAP | 1.12274 | 0.936 |
68DAP/14DAP | 1.00938 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.2505 | 0.527 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.37133 | 0.106 |
Mature Green Tomato/Ripe Tomato | 1.17642 | |
Immature Eggplant/Mature Eggplant | 1.72261 | 0.05 |
Ripe Pepper/Ripe Tomato | 3.96174 | 1 |
Mature Eggplant/Ripe Tomato | 1.51609 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11597 | 0.877 |
1-1-2/M82 | 1.09201 | 1 |
12-2/M82 | 1.07161 | 1 |
12-4/M82 | 1.15037 | 1 |
1-3/M82 | 0.76758 | 0.501 |
2-1-1/M82 | 1.04018 | 1 |
2-1/M82 | 1.24683 | 0.335 |
2-6/M82 | 1.02285 | 1 |
3-2/M82 | 0.92086 | |
4-1-1/M82 | 0.84566 | 0.668 |
4-1/M82 | 0.95094 | |
4-3-2/M82 | 1.07186 | |
4-3/M82 | 1.05258 | 1 |
5-3/M82 | 0.95171 | 1 |
6-2/M82 | 1.0417 | 1 |
6-3/M82 | 0.97608 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.05639 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.25499 | 0.277 |
IL2-6/WTpooled | 0.90394 | 1 |
IL7-5/WTpooled | 0.71579 | 0.559 |
IL7-3/WTpooled | 0.94602 | 1 |
IL12-4/WTpooled | 1.07472 | 0.839 |
IL1-4/WTpooled | 0.74519 | 0.444 |
WT/WTpooled | 1.03294 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94808 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94567 | 1 |
DC3000/delta hrp 6h | 1.19034 | 1 |
DC3000/delta hrp 12h | 1.1676 | 1 |
DC3000/delta hrp 24h | 1.16037 | 0.182 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.50085 | 0.044 |
DC3000 delta B/DC3000 delta AB | 1.35451 | 0.087 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.24851 | 1 |
Exp 36h | 1.02833 | 1 |
Exp 60h | 1.2335 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04444 | 1 |
Var 0h | 1.09963 | 0.98 |
Var 12h I row2-row1 | 1.1675 | 0.324 |
Var 12h NI row2-row1 | 1.07362 | 0.649 |
Var 36h I row2-row1 | 1.24473 | 0.742 |
Var 36h NI row2-row1 | 0.97468 | 0.852 |
Var 60h I row2-row1 | 0.66539 | 0.293 |
Var 60h NI row2-row1 | 0.80872 | 0.302 |
Time course 0hI-0hNI | 1.15848 | 0.182 |
Time course 12hI-12hNI | 0.9744 | 0.82 |
Time course 36hI-36hNI | 1.32037 | 0.005 |
Time course 60hI-60hNI | 2.36041 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9002 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 0.83312 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.04952 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0097 | 0.723 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01486 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.77421 | 0.183 |
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