Expression of 1-1-5.3.19.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83496 | 0.436 |
27DAP/17DAP | 1.02496 | 1 |
39DAP/27DAP | 0.76727 | 0.487 |
41DAP/39DAP | 0.84831 | 0.453 |
42DAP/41DAP | 0.97351 | 1 |
43DAP/42DAP | 0.98088 | 0.925 |
47DAP/43DAP | 0.82825 | 0.484 |
52DAP/47DAP | 1.46628 | 0.466 |
57DAP/52DAP | 1.07968 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88296 | 0.254 |
17DAP/reference | 1.23245 | 0.606 |
27DAP/reference | 1.16931 | 0.529 |
39DAP/reference | 1.45279 | 0.051 |
41DAP/reference | 1.66386 | 0.013 |
42DAP/reference | 1.08956 | 0.398 |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.97864 | 0.602 |
52DAP/reference | 1.2365 | 0.256 |
57DAP/reference | 1.02053 | 0.701 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17948 | 0.515 |
27DAP/17DAP | 1.0666 | 0.912 |
39DAP/27DAP | 0.83146 | 0.092 |
41DAP/39DAP | 1.10058 | 0.79 |
42DAP/41DAP | 0.94143 | 0.548 |
43DAP/42DAP | 0.86062 | 0.197 |
47DAP/43DAP | 0.96898 | 0.861 |
52DAP/47DAP | 0.91082 | 0.671 |
57DAP/52DAP | 0.943 | 0.608 |
57DAP/7DAP | 0.99616 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.66746 | 0.071 |
17DAP/reference | 0.83048 | 0.056 |
27DAP/reference | 1.10101 | 0.301 |
39DAP/reference | 0.79609 | 0.049 |
41DAP/reference | 0.87656 | 0.116 |
42DAP/reference | 0.93637 | 0.222 |
43DAP/reference | 0.74222 | 0.04 |
47DAP/reference | 0.91642 | 0.504 |
52DAP/reference | 0.76978 | 0.043 |
57DAP/reference | 0.73683 | 0.024 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79735 | 0.204 |
17DAP/reference | 0.97305 | 0.447 |
27DAP/reference | 1.23119 | 0.067 |
39DAP/reference | 1.15949 | 0.639 |
41DAP/reference | 1.20621 | 0.327 |
42DAP/reference | 1.10032 | 0.826 |
43DAP/reference | 1.46519 | 0.05 |
47DAP/reference | 1.10658 | 0.4 |
52DAP/reference | 1.38046 | 0.322 |
57DAP/reference | 0.91411 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76271 | 0.033 |
17DAP/reference | 0.95111 | 0.537 |
27DAP/reference | 0.9623 | 0.49 |
39DAP/reference | 0.89143 | 0.111 |
41DAP/reference | 1.08562 | 0.333 |
42DAP/reference | 1.17056 | 0.313 |
43DAP/reference | 0.8551 | 0.226 |
47DAP/reference | 1.10129 | 1 |
52DAP/reference | 0.97189 | 0.663 |
57DAP/reference | 1.21646 | 0.842 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.68246 | 0.172 |
26DAP/20DAP | 1.09532 | 0.896 |
34DAP/26DAP | 1.29886 | 0.819 |
51DAP/34DAP | 1.18143 | 0.854 |
52DAP/51DAP | 0.65873 | 1 |
53DAP/52DAP | 1.16604 | 0.806 |
55DAP/53DAP | 1.20841 | 0.869 |
57DAP/55DAP | 0.91775 | 0.644 |
62DAP/57DAP | 0.89994 | 0.681 |
68DAP/62DAP | 1.1662 | 1 |
68DAP/14DAP | 1.00646 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.45099 | 0.081 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.90038 | 0.446 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.19919 | |
Mature Eggplant/Ripe Tomato | 0.90921 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.29836 | 0.574 |
1-1-2/M82 | 1.2224 | 1 |
12-2/M82 | 1.07236 | |
12-4/M82 | 0.89134 | 0.358 |
1-3/M82 | 0.78653 | |
2-1-1/M82 | 0.8895 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.11296 | 0.968 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.39838 | |
4-3/M82 | 1.58467 | 1 |
5-3/M82 | 1.02008 | 1 |
6-2/M82 | 0.89162 | |
6-3/M82 | 0.81688 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.26142 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.06415 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.87608 | 0.418 |
IL12-4/WTpooled | 0.97817 | 1 |
IL1-4/WTpooled | 1.00391 | 1 |
WT/WTpooled | 0.98715 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94962 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03734 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.99561 | 1 |
DC3000/delta hrp 24h | 0.88138 | 0.292 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.6909 | 0.032 |
DC3000 delta B/DC3000 delta AB | 0.92117 | 0.529 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00947 | 1 |
Var 0h | 0.93979 | 1 |
Var 12h I row2-row1 | 0.92757 | 0.418 |
Var 12h NI row2-row1 | 1.08969 | 0.649 |
Var 36h I row2-row1 | 1.12694 | 0.309 |
Var 36h NI row2-row1 | 0.88598 | 0.706 |
Var 60h I row2-row1 | 0.9083 | 0.952 |
Var 60h NI row2-row1 | 0.97676 | 1 |
Time course 0hI-0hNI | 0.96371 | 0.791 |
Time course 12hI-12hNI | 0.99497 | 1 |
Time course 36hI-36hNI | 1.01729 | 0.722 |
Time course 60hI-60hNI | 0.55179 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.84257 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89445 | 0.12 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.58793 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.4366 | 1 |
Manapal/WT (red) | 1.1853 | 1 |
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