Expression of 1-1-5.3.19.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.834960.436
27DAP/17DAP1.024961
39DAP/27DAP0.767270.487
41DAP/39DAP0.848310.453
42DAP/41DAP0.973511
43DAP/42DAP0.980880.925
47DAP/43DAP0.828250.484
52DAP/47DAP1.466280.466
57DAP/52DAP1.079680.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.882960.254
17DAP/reference1.232450.606
27DAP/reference1.169310.529
39DAP/reference1.452790.051
41DAP/reference1.663860.013
42DAP/reference1.089560.398
43DAP/referenceN/AN/A
47DAP/reference0.978640.602
52DAP/reference1.23650.256
57DAP/reference1.020530.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.179480.515
27DAP/17DAP1.06660.912
39DAP/27DAP0.831460.092
41DAP/39DAP1.100580.79
42DAP/41DAP0.941430.548
43DAP/42DAP0.860620.197
47DAP/43DAP0.968980.861
52DAP/47DAP0.910820.671
57DAP/52DAP0.9430.608
57DAP/7DAP0.996161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.667460.071
17DAP/reference0.830480.056
27DAP/reference1.101010.301
39DAP/reference0.796090.049
41DAP/reference0.876560.116
42DAP/reference0.936370.222
43DAP/reference0.742220.04
47DAP/reference0.916420.504
52DAP/reference0.769780.043
57DAP/reference0.736830.024

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.797350.204
17DAP/reference0.973050.447
27DAP/reference1.231190.067
39DAP/reference1.159490.639
41DAP/reference1.206210.327
42DAP/reference1.100320.826
43DAP/reference1.465190.05
47DAP/reference1.106580.4
52DAP/reference1.380460.322
57DAP/reference0.914110.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.762710.033
17DAP/reference0.951110.537
27DAP/reference0.96230.49
39DAP/reference0.891430.111
41DAP/reference1.085620.333
42DAP/reference1.170560.313
43DAP/reference0.85510.226
47DAP/reference1.101291
52DAP/reference0.971890.663
57DAP/reference1.216460.842

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.682460.172
26DAP/20DAP1.095320.896
34DAP/26DAP1.298860.819
51DAP/34DAP1.181430.854
52DAP/51DAP0.658731
53DAP/52DAP1.166040.806
55DAP/53DAP1.208410.869
57DAP/55DAP0.917750.644
62DAP/57DAP0.899940.681
68DAP/62DAP1.16621
68DAP/14DAP1.006461

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.450990.081

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.900380.446
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.19919
Mature Eggplant/Ripe Tomato0.90921

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.298360.574
1-1-2/M821.22241
12-2/M821.07236
12-4/M820.891340.358
1-3/M820.78653
2-1-1/M820.88950.465
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M821.112960.968
4-1/M82N/AN/A
4-3-2/M821.39838
4-3/M821.584671
5-3/M821.020081
6-2/M820.89162
6-3/M820.81688
7-1/M82N/AN/A
7-2/M821.26142
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.064150.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.876080.418
IL12-4/WTpooled0.978171
IL1-4/WTpooled1.003911
WT/WTpooled0.987151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.949620.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.037340.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.995611
DC3000/delta hrp 24h0.881380.292

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.69090.032
DC3000 delta B/DC3000 delta AB0.921170.529

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.009471
Var 0h0.939791
Var 12h I row2-row10.927570.418
Var 12h NI row2-row11.089690.649
Var 36h I row2-row11.126940.309
Var 36h NI row2-row10.885980.706
Var 60h I row2-row10.90830.952
Var 60h NI row2-row10.976761
Time course 0hI-0hNI0.963710.791
Time course 12hI-12hNI0.994971
Time course 36hI-36hNI1.017290.722
Time course 60hI-60hNI0.551790.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.842571

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.894450.12

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.587930.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.43661
Manapal/WT (red)1.18531