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Expression of 1-1-5.3.2.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.939120.627
27DAP/17DAP0.872930.7
39DAP/27DAP1.359850.667
41DAP/39DAP1.004460.636
42DAP/41DAP1.091030.92
43DAP/42DAP0.77860.467
47DAP/43DAP0.825560.467
52DAP/47DAP1.219040.543
57DAP/52DAP1.006590.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.01051
17DAP/reference1.015691
27DAP/reference1.322960.054
39DAP/reference1.409390.016
41DAP/reference1.226890.062
42DAP/reference1.073490.191
43DAP/reference1.157260.011
47DAP/reference1.082280.078
52DAP/reference1.137590.286
57DAP/reference1.27930.07

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.340590.298
27DAP/17DAP1.060690.909
39DAP/27DAP1.006081
41DAP/39DAP1.005031
42DAP/41DAP0.969420.732
43DAP/42DAP0.944020.558
47DAP/43DAP1.225380.873
52DAP/47DAP0.940990.899
57DAP/52DAP1.06020.793
57DAP/7DAP0.64829N/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.27090.472
17DAP/reference0.802450.072
27DAP/reference1.414410.041
39DAP/reference1.225650.282
41DAP/reference1.18290.159
42DAP/reference1.219840.889
43DAP/reference1.414530.099
47DAP/reference1.091270.571
52DAP/reference1.011650.621
57DAP/reference1.377960.288

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.169490.193
17DAP/reference1.145720.156
27DAP/reference1.226780.087
39DAP/reference1.065330.29
41DAP/reference1.201240.199
42DAP/reference1.262280.038
43DAP/reference1.581970.042
47DAP/reference1.437380.008
52DAP/reference1.262110.322
57DAP/reference1.244960.091

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.890790.29
17DAP/reference1.036620.706
27DAP/reference1.260750.207
39DAP/reference1.215180.009
41DAP/reference1.518530.041
42DAP/reference0.959780.671
43DAP/reference1.43590.505
47DAP/reference1.042161
52DAP/reference1.176980.335
57DAP/reference1.428580.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.843170.733
26DAP/20DAP1.332770.512
34DAP/26DAP1.243841
51DAP/34DAP1.042220.949
52DAP/51DAP0.724760.151
53DAP/52DAP1.430980.688
55DAP/53DAP0.88910.619
57DAP/55DAP1.112290.841
62DAP/57DAP1.199451
68DAP/62DAP0.957150.787
68DAP/14DAP1.160790.453

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.087980.099

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.959390.673
Mature Green Tomato/Ripe Tomato0.651120.024
Immature Eggplant/Mature Eggplant1.038690.659
Ripe Pepper/Ripe Tomato1.397991
Mature Eggplant/Ripe Tomato1.241761

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.124970.742
1-1-2/M821.15410.977
12-2/M821.087721
12-4/M820.908890.619
1-3/M821.370121
2-1-1/M820.80391N/A
2-1/M821.01225N/A
2-6/M821.147690.695
3-2/M821.15995N/A
4-1-1/M820.989551
4-1/M821.34716N/A
4-3-2/M821.62104N/A
4-3/M821.179981
5-3/M820.973251
6-2/M820.926471
6-3/M820.766051
7-1/M82N/AN/A
7-2/M820.89370.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.888240.247
IL2-6/WTpooled1.185530.395
IL7-5/WTpooled0.961931
IL7-3/WTpooled1.074921
IL12-4/WTpooled1.043620.891
IL1-4/WTpooled1.00851
WT/WTpooled1.121450.794

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.145410.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.021140.921
DC3000/delta hrp 6h1.01580.95
DC3000/delta hrp 12h1.002621
DC3000/delta hrp 24h1.110290.296

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.7459N/A
DC3000 delta B/DC3000 delta AB2.27554N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.049831
Exp 36h1.344780.489
Exp 60h1.173360.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991241
Var 0h0.694821
Var 12h I row2-row11.056851
Var 12h NI row2-row11.734470.281
Var 36h I row2-row11.45280.309
Var 36h NI row2-row11.113431
Var 60h I row2-row10.962341
Var 60h NI row2-row10.691560.516
Time course 0hI-0hNI1.041020.852
Time course 12hI-12hNI1.723470.011
Time course 36hI-36hNI2.576390.005
Time course 60hI-60hNI3.16180.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.009880.798
transgenic ySAMdc/azygous control (breaker)0.723360.15
transgenic ySAMdc/azygous control (red)0.945331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.05930.066

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.645030.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.341650.093
Manapal/WT (break)1.878960.14
Manapal/WT (red)1.054661