Expression of 1-1-5.3.2.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93912 | 0.627 |
27DAP/17DAP | 0.87293 | 0.7 |
39DAP/27DAP | 1.35985 | 0.667 |
41DAP/39DAP | 1.00446 | 0.636 |
42DAP/41DAP | 1.09103 | 0.92 |
43DAP/42DAP | 0.7786 | 0.467 |
47DAP/43DAP | 0.82556 | 0.467 |
52DAP/47DAP | 1.21904 | 0.543 |
57DAP/52DAP | 1.00659 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0105 | 1 |
17DAP/reference | 1.01569 | 1 |
27DAP/reference | 1.32296 | 0.054 |
39DAP/reference | 1.40939 | 0.016 |
41DAP/reference | 1.22689 | 0.062 |
42DAP/reference | 1.07349 | 0.191 |
43DAP/reference | 1.15726 | 0.011 |
47DAP/reference | 1.08228 | 0.078 |
52DAP/reference | 1.13759 | 0.286 |
57DAP/reference | 1.2793 | 0.07 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.34059 | 0.298 |
27DAP/17DAP | 1.06069 | 0.909 |
39DAP/27DAP | 1.00608 | 1 |
41DAP/39DAP | 1.00503 | 1 |
42DAP/41DAP | 0.96942 | 0.732 |
43DAP/42DAP | 0.94402 | 0.558 |
47DAP/43DAP | 1.22538 | 0.873 |
52DAP/47DAP | 0.94099 | 0.899 |
57DAP/52DAP | 1.0602 | 0.793 |
57DAP/7DAP | 0.64829 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2709 | 0.472 |
17DAP/reference | 0.80245 | 0.072 |
27DAP/reference | 1.41441 | 0.041 |
39DAP/reference | 1.22565 | 0.282 |
41DAP/reference | 1.1829 | 0.159 |
42DAP/reference | 1.21984 | 0.889 |
43DAP/reference | 1.41453 | 0.099 |
47DAP/reference | 1.09127 | 0.571 |
52DAP/reference | 1.01165 | 0.621 |
57DAP/reference | 1.37796 | 0.288 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16949 | 0.193 |
17DAP/reference | 1.14572 | 0.156 |
27DAP/reference | 1.22678 | 0.087 |
39DAP/reference | 1.06533 | 0.29 |
41DAP/reference | 1.20124 | 0.199 |
42DAP/reference | 1.26228 | 0.038 |
43DAP/reference | 1.58197 | 0.042 |
47DAP/reference | 1.43738 | 0.008 |
52DAP/reference | 1.26211 | 0.322 |
57DAP/reference | 1.24496 | 0.091 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89079 | 0.29 |
17DAP/reference | 1.03662 | 0.706 |
27DAP/reference | 1.26075 | 0.207 |
39DAP/reference | 1.21518 | 0.009 |
41DAP/reference | 1.51853 | 0.041 |
42DAP/reference | 0.95978 | 0.671 |
43DAP/reference | 1.4359 | 0.505 |
47DAP/reference | 1.04216 | 1 |
52DAP/reference | 1.17698 | 0.335 |
57DAP/reference | 1.42858 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.84317 | 0.733 |
26DAP/20DAP | 1.33277 | 0.512 |
34DAP/26DAP | 1.24384 | 1 |
51DAP/34DAP | 1.04222 | 0.949 |
52DAP/51DAP | 0.72476 | 0.151 |
53DAP/52DAP | 1.43098 | 0.688 |
55DAP/53DAP | 0.8891 | 0.619 |
57DAP/55DAP | 1.11229 | 0.841 |
62DAP/57DAP | 1.19945 | 1 |
68DAP/62DAP | 0.95715 | 0.787 |
68DAP/14DAP | 1.16079 | 0.453 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.08798 | 0.099 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.95939 | 0.673 |
Mature Green Tomato/Ripe Tomato | 0.65112 | 0.024 |
Immature Eggplant/Mature Eggplant | 1.03869 | 0.659 |
Ripe Pepper/Ripe Tomato | 1.39799 | 1 |
Mature Eggplant/Ripe Tomato | 1.24176 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.12497 | 0.742 |
1-1-2/M82 | 1.1541 | 0.977 |
12-2/M82 | 1.08772 | 1 |
12-4/M82 | 0.90889 | 0.619 |
1-3/M82 | 1.37012 | 1 |
2-1-1/M82 | 0.80391 | |
2-1/M82 | 1.01225 | |
2-6/M82 | 1.14769 | 0.695 |
3-2/M82 | 1.15995 | |
4-1-1/M82 | 0.98955 | 1 |
4-1/M82 | 1.34716 | |
4-3-2/M82 | 1.62104 | |
4-3/M82 | 1.17998 | 1 |
5-3/M82 | 0.97325 | 1 |
6-2/M82 | 0.92647 | 1 |
6-3/M82 | 0.76605 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.8937 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88824 | 0.247 |
IL2-6/WTpooled | 1.18553 | 0.395 |
IL7-5/WTpooled | 0.96193 | 1 |
IL7-3/WTpooled | 1.07492 | 1 |
IL12-4/WTpooled | 1.04362 | 0.891 |
IL1-4/WTpooled | 1.0085 | 1 |
WT/WTpooled | 1.12145 | 0.794 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14541 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02114 | 0.921 |
DC3000/delta hrp 6h | 1.0158 | 0.95 |
DC3000/delta hrp 12h | 1.00262 | 1 |
DC3000/delta hrp 24h | 1.11029 | 0.296 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.7459 | |
DC3000 delta B/DC3000 delta AB | 2.27554 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04983 | 1 |
Exp 36h | 1.34478 | 0.489 |
Exp 60h | 1.17336 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99124 | 1 |
Var 0h | 0.69482 | 1 |
Var 12h I row2-row1 | 1.05685 | 1 |
Var 12h NI row2-row1 | 1.73447 | 0.281 |
Var 36h I row2-row1 | 1.4528 | 0.309 |
Var 36h NI row2-row1 | 1.11343 | 1 |
Var 60h I row2-row1 | 0.96234 | 1 |
Var 60h NI row2-row1 | 0.69156 | 0.516 |
Time course 0hI-0hNI | 1.04102 | 0.852 |
Time course 12hI-12hNI | 1.72347 | 0.011 |
Time course 36hI-36hNI | 2.57639 | 0.005 |
Time course 60hI-60hNI | 3.1618 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00988 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.72336 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.94533 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0593 | 0.066 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.64503 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.34165 | 0.093 |
Manapal/WT (break) | 1.87896 | 0.14 |
Manapal/WT (red) | 1.05466 | 1 |
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